CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX74819
CDX84081
CDX92171
CDX93223
CDX93225
CDX95810
CDY07040
CDY07041
CDY20501
CDY24941
CDY26910
CDY60996

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74950.1	CDX73261	AT1G32640.1	19309455
AT1G74950.1	CDX84081	AT1G32640.1	19309455
AT1G74950.1	CDY26910	AT1G32640.1	19309455
AT1G74950.1	CDX74819	AT2G39940.1	18547396
AT1G74950.1	CDX93223	AT2G39940.1	18547396
AT1G74950.1	CDX93225	AT2G39940.1	18547396
AT1G74950.1	CDY07040	AT2G39940.1	18547396
AT1G74950.1	CDY07041	AT2G39940.1	18547396
AT1G74950.1	CDY20501	AT2G39940.1	18547396
AT1G74950.1	CDY24941	AT2G39940.1	18547396
AT1G74950.1	CDY60996	AT2G39940.1	18547396
AT1G74950.1	CDX92171	AT3G17860.1	19309455
AT1G74950.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68156	Canola	cytosol	66.96	82.87
Bra003778.1-P	Field mustard	cytosol	74.55	75.23
CDY46022	Canola	nucleus	57.14	53.33
CDY45408	Canola	cytosol	56.25	51.43
CDX73127	Canola	cytosol	54.02	49.39
CDY37269	Canola	nucleus	52.68	49.17
AT1G74950.1	Thale cress	cytosol	49.11	44.18
CDX96675	Canola	plastid	41.52	35.36
CDY41023	Canola	plastid	39.73	35.04
CDY26697	Canola	plastid	39.29	34.78
CDX83781	Canola	plastid	40.62	34.47
CDX73289	Canola	cytosol	28.12	33.51
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	37.95	31.72
Solyc07g042170.2.1	Tomato	cytosol	30.36	31.48
PGSC0003DMT400075155	Potato	nucleus	29.46	30.7
GSMUA_Achr6P31050_001	Banana	cytosol	28.57	30.05
GSMUA_Achr2P21770_001	Banana	mitochondrion	28.57	28.96
GSMUA_Achr3P02140_001	Banana	mitochondrion	26.79	28.71
Os03t0402800-01	Rice	plastid	29.02	28.51
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	28.57	28.07
TraesCS2A01G169300.1	Wheat	plastid	28.57	27.71
Solyc12g009220.1.1	Tomato	nucleus	30.8	27.38
TraesCS2D01G176800.1	Wheat	plastid	28.12	27.27
TraesCS2B01G195600.1	Wheat	plastid	28.12	27.27
EER97533	Sorghum	plastid	28.57	27.23
GSMUA_Achr10P...	Banana	cytosol	19.64	27.16
Zm00001d022139_P001	Maize	plastid	28.12	27.04
GSMUA_Achr3P10270_001	Banana	cytosol	27.23	26.99
GSMUA_Achr11P...	Banana	cytosol	27.68	26.72
EER98969	Sorghum	cytosol	25.89	26.24
PGSC0003DMT400007592	Potato	nucleus	29.46	25.98
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	27.68	25.94
GSMUA_Achr3P05920_001	Banana	nucleus	28.57	25.5
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	27.23	25.31
GSMUA_Achr8P16780_001	Banana	cytosol	28.57	25.3
GSMUA_Achr9P14370_001	Banana	cytosol	29.91	25.28
TraesCS5D01G219300.2	Wheat	nucleus	25.89	25.22
CDY71173	Canola	nucleus	30.36	25.0
TraesCS5B01G211000.1	Wheat	nucleus	25.45	24.78
GSMUA_Achr5P22110_001	Banana	mitochondrion	27.23	24.7
EER92157	Sorghum	plastid	25.0	24.56
CDY03638	Canola	nucleus	29.91	24.54
GSMUA_Achr7P19850_001	Banana	cytosol	26.34	24.38
Os07t0615200-01	Rice	mitochondrion	26.34	24.18
Zm00001d006860_P001	Maize	plastid	28.57	24.06
Zm00001d020614_P001	Maize	cytosol, plastid	22.77	23.39
Zm00001d005813_P002	Maize	cytosol, plastid	23.21	22.91
GSMUA_AchrUn_...	Banana	nucleus	25.0	22.67
CDY16574	Canola	cytoskeleton, cytosol, nucleus	20.09	22.61
CDY26248	Canola	mitochondrion, nucleus	25.89	21.89
CDX96772	Canola	nucleus	25.89	21.72
Os09t0439200-01	Rice	plastid	22.32	21.55
CDX92427	Canola	cytosol	19.2	21.39
CDY09086	Canola	cytosol	20.98	21.27
CDX96409	Canola	nucleus	25.45	20.8
CDX72916	Canola	nucleus	25.0	20.66
TraesCS5A01G212800.1	Wheat	plastid	26.79	20.27
CDX81823	Canola	plastid	29.91	20.18
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	25.89	19.66
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	25.45	19.66
CDX81917	Canola	plastid	42.41	18.7
CDY71875	Canola	cytosol	17.86	17.78
CDY21679	Canola	plastid	42.86	17.61
GSMUA_Achr1P21870_001	Banana	mitochondrion	27.68	17.56

Protein Annotations

EnsemblPlants:CDX85865	EnsemblPlantsGene:GSBRNA2T00143661001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDX85865	ProteinID:CDX85865.1
SEG:seg	SMART:SM00979	UniParc:UPI0004EC1C09	MapMan:11.7.2.1.2	MapMan:15.5.45	:

Description

BnaC06g22690D

Coordinates

chrLK031843:-:381583..383085

Molecular Weight (calculated)

24492.8 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.609

Length

224 amino acids

Sequence
(BLAST)

001: MSSSAECWEF SGPKLPEKPS FSQTCSRLSR YLKEKGSFGD LSFAMTSKPD VNATGINSKA AQDVKLQNDM FPSQSSFSSS FGAKEEVVKI TETKVVKPEP
101: QSAPLTLFYS GQVMLFDDFP AEKAKQVIDL ANKGSANGFT AELNNNQSAY TKNIAKNQKE IASIPRPVPS PVKTAAQEPI QTNTSSLASE LPIARRASLH
201: RFLEKRKDRI TSKAPYQKEG STEA

Best Arabidopsis Sequence Match ( AT1G74950.1 )
(BLAST)

001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR

Arabidopsis Description

TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.