Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 43.08 | 49.32 |
| GSMUA_Achr11P... | Banana | cytosol | 39.53 | 43.1 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 34.78 | 42.11 |
| Zm00001d022139_P001 | Maize | plastid | 34.39 | 37.34 |
| GSMUA_Achr10P... | Banana | cytosol | 23.32 | 36.42 |
| EER97533 | Sorghum | plastid | 33.6 | 36.17 |
| Os03t0402800-01 | Rice | plastid | 32.41 | 35.96 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 30.04 | 35.68 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 32.02 | 35.53 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 36.76 | 35.09 |
| TraesCS2D01G176800.1 | Wheat | plastid | 32.02 | 35.06 |
| TraesCS2B01G195600.1 | Wheat | plastid | 32.02 | 35.06 |
| Os07t0615200-01 | Rice | mitochondrion | 33.6 | 34.84 |
| EER92157 | Sorghum | plastid | 30.43 | 33.77 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 31.62 | 33.47 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 32.41 | 33.2 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 31.62 | 33.2 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 20.16 | 32.9 |
| TraesCS2A01G169300.1 | Wheat | plastid | 30.04 | 32.9 |
| Zm00001d006860_P001 | Maize | plastid | 34.39 | 32.71 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 30.83 | 31.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.04 | 30.77 |
| Bra003778.1-P | Field mustard | cytosol | 26.88 | 30.63 |
| CDY37269 | Canola | nucleus | 28.85 | 30.42 |
| CDX73289 | Canola | cytosol | 22.53 | 30.32 |
| AT1G74950.1 | Thale cress | cytosol | 29.64 | 30.12 |
| CDY46022 | Canola | nucleus | 28.46 | 30.0 |
| CDX68156 | Canola | cytosol | 21.34 | 29.83 |
| CDX73127 | Canola | cytosol | 28.85 | 29.8 |
| Solyc07g042170.2.1 | Tomato | cytosol | 25.3 | 29.63 |
| Bra008172.1-P | Field mustard | nucleus | 28.06 | 29.58 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 41.11 | 29.46 |
| PGSC0003DMT400075155 | Potato | nucleus | 24.9 | 29.3 |
| PGSC0003DMT400007592 | Potato | nucleus | 28.85 | 28.74 |
| CDY45408 | Canola | cytosol | 27.67 | 28.57 |
| CDX85865 | Canola | cytosol | 25.3 | 28.57 |
| Solyc12g009220.1.1 | Tomato | nucleus | 28.46 | 28.57 |
| Bra015880.1-P | Field mustard | cytosol | 27.67 | 28.57 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 29.64 | 27.99 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 24.9 | 27.88 |
| AT1G19180.1 | Thale cress | cytosol | 27.67 | 27.67 |
| CDY26697 | Canola | plastid | 26.88 | 26.88 |
| Bra025713.1-P | Field mustard | plastid | 26.88 | 26.77 |
| Bra016520.1-P | Field mustard | plastid | 27.27 | 26.64 |
| CDX96675 | Canola | plastid | 27.67 | 26.62 |
| CDX83781 | Canola | plastid | 27.67 | 26.52 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 25.3 | 26.45 |
| CDY41023 | Canola | plastid | 26.48 | 26.38 |
| Bra031065.1-P | Field mustard | plastid | 27.27 | 25.27 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 15.02 | 23.17 |
| GSMUA_Achr10P... | Banana | cytosol | 15.41 | 22.03 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 15.41 | 21.08 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 18.18 | 20.18 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 15.41 | 17.81 |
| CDX81917 | Canola | plastid | 26.88 | 13.39 |
| CDY21679 | Canola | plastid | 27.67 | 12.84 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P16780_001 | EnsemblPlants:GSMUA_Achr8T16780_001 | EnsemblPlantsGene:GSMUA_Achr8G16780_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF9 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI000296D7FD | UniProt:M0TR31 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : |
Description
Putative Protein TIFY 10B [Source:GMGC_GENE;Acc:GSMUA_Achr8G16780_001]
Coordinates
chr8:+:14845255..14847018
Molecular Weight (calculated)
26627.5 Da
IEP (calculated)
9.889
GRAVY (calculated)
-0.308
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKQERTNF ALTCSLLSLY IKEKKGSVAD LGIGIAIAPI AAKGKSGLFR PPTTVSWLPE SDISSGAGGE RRTEGDEVPQ GNALELFPQR VGFGPAASED
101: VRDAESAPLT IFYGGKVSVF DNFPAEKAND LMQLASKGNS TAPNFGYVPA SSSSAMSSST ALSDQNPTLP KSANASLASH VRLPRSAQSG LSDLPIARKA
201: SLQRFLEKRK DRINARAPYQ VTASTGMGVP VEQEGSRAWL GLGPRSSIAS LTK
101: VRDAESAPLT IFYGGKVSVF DNFPAEKAND LMQLASKGNS TAPNFGYVPA SSSSAMSSST ALSDQNPTLP KSANASLASH VRLPRSAQSG LSDLPIARKA
201: SLQRFLEKRK DRINARAPYQ VTASTGMGVP VEQEGSRAWL GLGPRSSIAS LTK
001: MSLFPCEASN MDSMVQDVKP TNLFPRQPSF SSSSSSLPKE DVLKMTQTTR SVKPESQTAP LTIFYAGQVI VFNDFSAEKA KEVINLASKG TANSLAKNQT
101: DIRSNIATIA NQVPHPRKTT TQEPIQSSPT PLTELPIARR ASLHRFLEKR KDRVTSKAPY QLCDPAKASS NPQTTGNMSW LGLAAEI
101: DIRSNIATIA NQVPHPRKTT TQEPIQSSPT PLTELPIARR ASLHRFLEKR KDRVTSKAPY QLCDPAKASS NPQTTGNMSW LGLAAEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.