Factsheet for GSMUA_Achr10P03000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23800_001	Banana	cytosol	38.98	37.3
GSMUA_Achr7P15650_001	Banana	plastid	29.94	34.19
GSMUA_Achr5P22010_001	Banana	cytosol	29.38	31.71
CDY16574	Canola	cytoskeleton, cytosol, nucleus	31.64	28.14
AT5G20900.1	Thale cress	cytosol	29.38	27.81
KRH12644	Soybean	nucleus	30.51	26.87
CDX92427	Canola	cytosol	30.51	26.87
GSMUA_Achr4P09660_001	Banana	cytosol	32.77	26.48
Bra002338.1-P	Field mustard	cytosol	29.94	26.37
CDY09086	Canola	cytosol	32.77	26.24
KRH37606	Soybean	cytosol, nucleus, plastid	30.51	26.21
Bra020135.1-P	Field mustard	cytosol	31.07	24.89
GSMUA_Achr8P24590_001	Banana	nucleus	31.64	24.56
KRH02523	Soybean	cytosol	24.29	21.83
KRH19420	Soybean	nucleus	24.29	20.77
GSMUA_Achr10P...	Banana	cytosol	17.51	19.14
GSMUA_Achr11P...	Banana	cytosol	23.73	18.1
GSMUA_Achr3P02140_001	Banana	mitochondrion	20.9	17.7
AT3G43440.1	Thale cress	cytosol	23.73	17.65
GSMUA_Achr2P21770_001	Banana	mitochondrion	22.03	17.65
GSMUA_Achr3P10270_001	Banana	cytosol	21.47	16.81
GSMUA_Achr6P31050_001	Banana	cytosol	19.21	15.96
GSMUA_Achr7P19850_001	Banana	cytosol	21.47	15.7
GSMUA_Achr3P05920_001	Banana	nucleus	22.03	15.54
GSMUA_Achr8P16780_001	Banana	cytosol	22.03	15.41
GSMUA_Achr5P22110_001	Banana	mitochondrion	21.47	15.38
GSMUA_AchrUn_...	Banana	nucleus	20.9	14.98
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	18.64	13.69
GSMUA_Achr9P14370_001	Banana	cytosol	19.77	13.21
GSMUA_Achr1P21870_001	Banana	mitochondrion	23.16	11.61

Protein Annotations

EnsemblPlants:GSMUA_Achr10P03000_001	EnsemblPlants:GSMUA_Achr10T03000_001	EnsemblPlantsGene:GSMUA_Achr10G03000_001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	SEG:seg
SMART:SM00979	UniParc:UPI000295F13F	UniProt:M0REX7	MapMan:35.2	:	:

Description

Transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr10G03000_001]

Coordinates

chr10:+:10102345..10105392

Molecular Weight (calculated)

19016.8 Da

IEP (calculated)

9.509

GRAVY (calculated)

-0.339

Length

177 amino acids

Sequence
(BLAST)

001: MANPLQAHVT DETDAENTEV KSSECNSGRI SPPRMPQPTQ LTIFYNGADS VYNGVPPEKA QAILLIAAAA TAASRAANKV GPTAAAAGLP ALTRSLSLQS
101: SNAGMRKIIV PRAQIFLGVS SPLCKQQAEL PMARRHSLQC FLEKRRNRLA GKAPYASVKP PDDIEMTYEQ KLGYNCH

Best Arabidopsis Sequence Match ( AT5G20900.1 )
(BLAST)

001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA

Arabidopsis Description

TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.