Factsheet for GSMUA_Achr1P21870_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P14370_001
GSMUA_Achr1P21870_001
GSMUA_Achr1P28110_001
GSMUA_Achr2P12970_001
GSMUA_Achr2P21770_001
GSMUA_Achr3P02140_001
GSMUA_Achr3P05920_001
GSMUA_Achr3P10270_001
GSMUA_Achr3P23250_001
GSMUA_Achr4P31480_001
GSMUA_Achr5P05170_001
GSMUA_Achr5P05900_001
GSMUA_Achr5P22110_001
GSMUA_Achr5P28930_001
GSMUA_Achr6P31050_001
GSMUA_Achr6P31200_001
GSMUA_Achr6P33630_001
GSMUA_Achr6P35730_001
GSMUA_Achr7P01220_001
GSMUA_Achr7P01230_001
GSMUA_Achr7P12530_001
GSMUA_Achr7P14640_001
GSMUA_Achr7P19850_001
GSMUA_Achr8P02350_001
GSMUA_Achr8P05350_001
GSMUA_Achr8P16780_001
GSMUA_Achr8P26280_001
GSMUA_Achr9P03690_001
GSMUA_Achr9P10340_001
GSMUA_Achr9P14370_001
GSMUA_Achr9P15630_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19180.1	GSMUA_Achr10P...	AT1G01260.1	21798944
AT1G19180.1	GSMUA_Achr1P14370_001	AT1G01260.1	21798944
AT1G19180.1	GSMUA_Achr1P28110_001	AT1G01260.1	21798944
AT1G19180.1	GSMUA_Achr6P35730_001	AT1G01260.1	21798944
AT1G19180.1	GSMUA_Achr7P14640_001	AT1G01260.1	21798944
AT1G19180.1	GSMUA_Achr8P05350_001	AT1G01260.1	21798944
AT1G19180.1	GSMUA_Achr8P26280_001	AT1G01260.1	21798944
AT1G19180.1	GSMUA_AchrUn_...	AT1G01260.1	21798944
AT1G19180.1	GSMUA_Achr10P...	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr11P...	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr1P21870_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr2P21770_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr3P02140_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr3P05920_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr3P10270_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr5P05170_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr5P22110_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr6P31050_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr7P19850_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr8P16780_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr9P14370_001	AT1G19180.1	19309455
AT1G19180.1	GSMUA_AchrUn_...	AT1G19180.1	19309455
AT1G19180.1	GSMUA_Achr10P...	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr11P...	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr1P21870_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr2P21770_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr3P02140_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr3P05920_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr3P10270_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr5P05170_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr5P22110_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr6P31050_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr7P19850_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr8P16780_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr9P14370_001	AT1G19180.1	21798944
AT1G19180.1	GSMUA_AchrUn_...	AT1G19180.1	21798944
AT1G19180.1	GSMUA_Achr2P12970_001	AT1G30135.1	19309455
AT1G19180.1	GSMUA_Achr3P23250_001	AT1G30135.1	19309455
AT1G19180.1	GSMUA_Achr4P31480_001	AT1G30135.1	19309455
AT1G19180.1	GSMUA_Achr6P31200_001	AT1G30135.1	19309455
AT1G19180.1	GSMUA_Achr7P01220_001	AT1G30135.1	19309455
AT1G19180.1	GSMUA_Achr7P01230_001	AT1G30135.1	19309455
AT1G19180.1	GSMUA_Achr9P10340_001	AT1G30135.1	19309455
AT1G19180.1	GSMUA_Achr5P05900_001	AT1G48500.1	19309455
AT1G19180.1	GSMUA_Achr7P12530_001	AT1G48500.1	19309455
AT1G19180.1	GSMUA_Achr9P15630_001	AT1G48500.1	19309455
AT1G19180.1	GSMUA_Achr5P28930_001	AT2G39940.1	17637677
AT1G19180.1	GSMUA_Achr6P33630_001	AT2G39940.1	17637677
AT1G19180.1	GSMUA_Achr8P02350_001	AT2G39940.1	17637677
AT1G19180.1	GSMUA_Achr9P03690_001	AT2G39940.1	17637677
AT1G19180.1	GSMUA_Achr5P28930_001	AT2G39940.1	18547396
AT1G19180.1	GSMUA_Achr6P33630_001	AT2G39940.1	18547396
AT1G19180.1	GSMUA_Achr8P02350_001	AT2G39940.1	18547396
AT1G19180.1	GSMUA_Achr9P03690_001	AT2G39940.1	18547396
AT1G19180.1	GSMUA_Achr5P05900_001	AT3G17860.1	19309455
AT1G19180.1	GSMUA_Achr7P12530_001	AT3G17860.1	19309455
AT1G19180.1	GSMUA_Achr9P15630_001	AT3G17860.1	19309455
AT1G74950.1	GSMUA_Achr5P28930_001	AT2G39940.1	18547396
AT1G74950.1	GSMUA_Achr6P33630_001	AT2G39940.1	18547396
AT1G74950.1	GSMUA_Achr8P02350_001	AT2G39940.1	18547396
AT1G74950.1	GSMUA_Achr9P03690_001	AT2G39940.1	18547396
AT1G74950.1	GSMUA_Achr5P05900_001	AT3G17860.1	19309455
AT1G74950.1	GSMUA_Achr7P12530_001	AT3G17860.1	19309455
AT1G74950.1	GSMUA_Achr9P15630_001	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21770_001	Banana	mitochondrion	30.59	48.87
GSMUA_Achr6P31050_001	Banana	cytosol	25.21	41.78
Zm00001d022139_P001	Maize	plastid	27.2	41.2
GSMUA_Achr8P16780_001	Banana	cytosol	29.46	41.11
EER97533	Sorghum	plastid	26.63	40.0
GSMUA_Achr11P...	Banana	cytosol	25.78	39.22
GSMUA_Achr3P05920_001	Banana	nucleus	26.91	37.85
Os07t0615200-01	Rice	mitochondrion	26.06	37.7
GSMUA_Achr9P14370_001	Banana	cytosol	27.2	36.23
Solyc07g042170.2.1	Tomato	cytosol	22.1	36.11
Zm00001d006860_P001	Maize	plastid	27.2	36.09
GSMUA_Achr5P22110_001	Banana	mitochondrion	25.21	36.03
GSMUA_Achr3P02140_001	Banana	mitochondrion	21.25	35.89
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	24.36	35.68
TraesCS2B01G195600.1	Wheat	plastid	23.23	35.5
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	23.8	35.15
TraesCS2D01G176800.1	Wheat	plastid	22.95	35.06
PGSC0003DMT400075155	Potato	nucleus	21.25	34.88
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	22.38	34.65
GSMUA_Achr10P...	Banana	cytosol	15.86	34.57
EER92157	Sorghum	plastid	22.1	34.21
Os03t0402800-01	Rice	plastid	22.1	34.21
TraesCS2A01G169300.1	Wheat	plastid	22.1	33.77
GSMUA_Achr7P19850_001	Banana	cytosol	22.66	33.06
Bra008172.1-P	Field mustard	nucleus	22.38	32.92
CDY46022	Canola	nucleus	22.1	32.5
GSMUA_AchrUn_...	Banana	nucleus	22.66	32.39
CDX73127	Canola	cytosol	22.38	32.24
CDY26697	Canola	plastid	22.66	31.62
CDY41023	Canola	plastid	22.66	31.5
Bra025713.1-P	Field mustard	plastid	22.66	31.5
PGSC0003DMT400007592	Potato	nucleus	22.66	31.5
AT1G74950.1	Thale cress	cytosol	22.1	31.33
AT1G19180.1	Thale cress	cytosol	22.38	31.23
CDY45408	Canola	cytosol	21.53	31.02
Bra015880.1-P	Field mustard	cytosol	21.53	31.02
GSMUA_Achr3P10270_001	Banana	cytosol	19.83	30.97
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	23.51	30.97
Solyc12g009220.1.1	Tomato	nucleus	22.1	30.95
CDY37269	Canola	nucleus	20.96	30.83
Bra016520.1-P	Field mustard	plastid	22.1	30.12
CDX83781	Canola	plastid	22.38	29.92
CDX96675	Canola	plastid	22.1	29.66
Bra031065.1-P	Field mustard	plastid	22.66	29.3
CDX85865	Canola	cytosol	17.56	27.68
Bra003778.1-P	Field mustard	cytosol	17.28	27.48
CDX68156	Canola	cytosol	13.6	26.52
GSMUA_Achr7P15650_001	Banana	plastid	11.33	25.81
CDX73289	Canola	cytosol	13.31	25.0
GSMUA_Achr5P22010_001	Banana	cytosol	11.33	24.39
GSMUA_Achr8P23800_001	Banana	cytosol	12.46	23.78
GSMUA_Achr10P...	Banana	cytosol	11.61	23.16
GSMUA_Achr4P09660_001	Banana	cytosol	13.6	21.92
GSMUA_Achr8P24590_001	Banana	nucleus	13.88	21.49
CDX81917	Canola	plastid	21.81	15.16
CDY21679	Canola	plastid	22.1	14.31

Protein Annotations

EnsemblPlants:GSMUA_Achr1P21870_001	EnsemblPlants:GSMUA_Achr1T21870_001	EnsemblPlantsGene:GSMUA_Achr1G21870_001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF19	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	SEG:seg
SMART:SM00979	UniParc:UPI0002963484	UniProt:M0S1Z5	MapMan:11.7.2.1.2	MapMan:15.5.45	:

Description

Putative Protein TIFY 10B [Source:GMGC_GENE;Acc:GSMUA_Achr1G21870_001]

Coordinates

chr1:-:16414533..16416990

Molecular Weight (calculated)

38140.5 Da

IEP (calculated)

10.041

GRAVY (calculated)

-0.548

Length

353 amino acids

Sequence
(BLAST)

001: MKSIQLTSSA TAVSRRFKGS RALYPPPVPC AHLLLCIYKT WRRLCEGKTK AGGKAAVTLS PTNRREEGEK RKTFKVELRR RGKEDMDAAM GRKQGRSGEK
101: SNFAVVCSLL SQYIKEKGSV VADLGLGVPP PPLDAPKGKS EAFRPPPTTM MLLPGADVSG GEGEGERTGE EELRVDTMEL FPQRAGFGPS SVTALAADGK
201: PGDASDVREP KRAQLTIFYG DKVLVFDSFP SDKVKNLMQL ASKVTSTMQN SCYVEPSSSA LAAAVVDHHP TNLSNQETKF TTSSVSNSVA AHSDLERTAQ
301: SDLPIARKSS LQRFLEKRKD RISAKSPYQV TGSSESPAPV KPEDGKPWLG LGQ

Best Arabidopsis Sequence Match ( AT1G74950.1 )
(BLAST)

001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR

Arabidopsis Description

TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.