Factsheet for Bra025713.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra005000.1-P
Bra009783.1-P
Bra010178.1-P
Bra010794.1-P
Bra017044.1-P
Bra017045.1-P
Bra020466.1-P
Bra022254.1-P
Bra025713.1-P
Bra032362.1-P
Bra033273.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19180.1	Bra033273.1-P	AT1G01260.1	21798944
AT1G19180.1	Bra025713.1-P	AT1G19180.1	19309455
AT1G19180.1	Bra025713.1-P	AT1G19180.1	21798944
AT1G19180.1	Bra010794.1-P	AT1G30135.1	19309455
AT1G19180.1	Bra032362.1-P	AT1G30135.1	19309455
AT1G19180.1	Bra010178.1-P	AT1G32640.1	18547396
AT1G19180.1	Bra010178.1-P	AT1G32640.1	19309455
AT1G19180.1	Bra000156.1-P	AT2G39940.1	17637677
AT1G19180.1	Bra005000.1-P	AT2G39940.1	17637677
AT1G19180.1	Bra017044.1-P	AT2G39940.1	17637677
AT1G19180.1	Bra017045.1-P	AT2G39940.1	17637677
AT1G19180.1	Bra000156.1-P	AT2G39940.1	18547396
AT1G19180.1	Bra005000.1-P	AT2G39940.1	18547396
AT1G19180.1	Bra017044.1-P	AT2G39940.1	18547396
AT1G19180.1	Bra017045.1-P	AT2G39940.1	18547396
AT1G19180.1	Bra022254.1-P	AT3G17860.1	19309455
AT1G19180.1	Bra009783.1-P	AT5G24660.1	21798944
AT1G19180.1	Bra020466.1-P	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26697	Canola	plastid	96.06	96.44
CDY41023	Canola	plastid	89.37	89.37
AT1G19180.1	Thale cress	cytosol	69.69	69.96
Bra016520.1-P	Field mustard	plastid	68.5	67.18
Bra031065.1-P	Field mustard	plastid	71.26	66.3
Bra008172.1-P	Field mustard	nucleus	48.82	51.67
Bra015880.1-P	Field mustard	cytosol	46.46	48.16
Bra003778.1-P	Field mustard	cytosol	36.22	41.44
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	42.91	40.67
Solyc07g042170.2.1	Tomato	cytosol	33.86	39.81
PGSC0003DMT400075155	Potato	nucleus	32.68	38.6
GSMUA_Achr6P31050_001	Banana	cytosol	28.35	33.8
PGSC0003DMT400007592	Potato	nucleus	33.46	33.46
EER97533	Sorghum	plastid	30.71	33.19
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	31.1	33.05
GSMUA_Achr2P21770_001	Banana	mitochondrion	28.74	33.03
Solyc12g009220.1.1	Tomato	nucleus	32.68	32.94
Os07t0615200-01	Rice	mitochondrion	30.71	31.97
TraesCS2B01G195600.1	Wheat	plastid	28.74	31.6
Os03t0402800-01	Rice	plastid	28.35	31.58
Zm00001d022139_P001	Maize	plastid	28.35	30.9
TraesCS2D01G176800.1	Wheat	plastid	27.95	30.74
GSMUA_Achr3P02140_001	Banana	mitochondrion	24.8	30.14
GSMUA_Achr5P22110_001	Banana	mitochondrion	29.13	29.96
GSMUA_Achr3P05920_001	Banana	nucleus	29.53	29.88
EER92157	Sorghum	plastid	26.77	29.82
GSMUA_Achr9P14370_001	Banana	cytosol	31.1	29.81
GSMUA_Achr7P19850_001	Banana	cytosol	27.56	28.93
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	27.17	28.63
TraesCS2A01G169300.1	Wheat	plastid	25.98	28.57
Os09t0439200-01	Rice	plastid	25.98	28.45
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	25.2	28.07
GSMUA_AchrUn_...	Banana	nucleus	27.17	27.94
TraesCS5D01G219300.2	Wheat	nucleus	25.2	27.83
EER98969	Sorghum	cytosol	24.02	27.6
GSMUA_Achr11P...	Banana	cytosol	25.2	27.59
Zm00001d006860_P001	Maize	plastid	28.74	27.44
GSMUA_Achr10P...	Banana	cytosol	17.32	27.16
TraesCS5B01G211000.1	Wheat	nucleus	24.41	26.96
GSMUA_Achr8P16780_001	Banana	cytosol	26.77	26.88
Zm00001d005813_P002	Maize	cytosol, plastid	24.02	26.87
Zm00001d020614_P001	Maize	cytosol, plastid	22.05	25.69
GSMUA_Achr3P10270_001	Banana	cytosol	22.05	24.78
Bra020135.1-P	Field mustard	cytosol	20.87	23.98
Bra016604.1-P	Field mustard	nucleus	25.2	23.7
Bra002338.1-P	Field mustard	cytosol	18.5	23.38
GSMUA_Achr1P21870_001	Banana	mitochondrion	31.5	22.66
Bra025977.1-P	Field mustard	nucleus	22.05	21.88
TraesCS5A01G212800.1	Wheat	plastid	25.2	21.62
Bra016056.1-P	Field mustard	nucleus	23.23	21.53
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	24.8	21.36
Bra008033.1-P	Field mustard	nucleus	22.83	21.25
Bra030986.1-P	Field mustard	nucleus	24.8	21.07

Protein Annotations

MapMan:11.7.2.1.2	MapMan:15.5.45	EnsemblPlantsGene:Bra025713	EnsemblPlants:Bra025713.1	EnsemblPlants:Bra025713.1-P	InterPro:CCT_CS
GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009719	GO:GO:0009753	GO:GO:0009791	GO:GO:0009867
GO:GO:0009908	GO:GO:0009987	GO:GO:0042742	GO:GO:1900067	InterPro:IPR010399	UniProt:M4EAA5
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	SMART:SM00979	InterPro:Tify_dom
UniParc:UPI000253F52E	SEG:seg	:	:	:	:

Description

AT1G19180 (E=8e-084) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding

Coordinates

chrA06:+:7441408..7442701

Molecular Weight (calculated)

27301.5 Da

IEP (calculated)

10.511

GRAVY (calculated)

-0.484

Length

254 amino acids

Sequence
(BLAST)

001: MSSSMECSAT RRSSSSGKPS FSLTCSRLSQ YLKENGSFGD LSLGMSCKPE TNGMSRKPTT TMSLFPCEAS NVGSMAAAQD VKPKNLFPRQ PSFSSSSSSI
101: PKEVVPKMTQ TTTTRSLKPE PQTAPLTIFY GGQVIVFNDF SAEKAKEVMN LASKGTANTF TGFKSTLNNN IAPTPNQVPH LMKTASQDPK QTSSAAMACE
201: LPIARRASLH RFLAKRKDRV TSKAPYQLSD PAKAFSKPQT GNSTTSWLGL AADM

Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.