Factsheet for Bra025977.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010178.1-P
Bra022254.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17380.1	Bra010178.1-P	AT1G32640.1	19309455
AT1G17380.1	Bra022254.1-P	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26248	Canola	mitochondrion, nucleus	71.88	69.43
Bra030986.1-P	Field mustard	nucleus	64.84	55.52
Bra016604.1-P	Field mustard	nucleus	53.91	51.11
AT1G17380.1	Thale cress	nucleus	48.44	45.26
Bra016056.1-P	Field mustard	nucleus	38.28	35.77
Bra008033.1-P	Field mustard	nucleus	35.16	32.97
Bra003778.1-P	Field mustard	cytosol	20.31	23.42
PGSC0003DMT400011155	Potato	nucleus	17.58	22.5
Bra002338.1-P	Field mustard	cytosol	17.58	22.39
Bra025713.1-P	Field mustard	plastid	21.88	22.05
KRH47640	Soybean	nucleus	19.92	21.98
KRH06217	Soybean	nucleus, plastid	19.53	21.74
Bra008172.1-P	Field mustard	nucleus	20.31	21.67
Bra015880.1-P	Field mustard	cytosol	20.7	21.63
Bra016520.1-P	Field mustard	plastid	21.88	21.62
Solyc12g049400.1.1	Tomato	cytosol	16.8	21.5
Bra031065.1-P	Field mustard	plastid	22.66	21.25
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	21.48	19.23
Solyc03g122190.2.1	Tomato	nucleus	22.66	18.77
PGSC0003DMT400058918	Potato	nucleus	22.27	18.45
Bra020135.1-P	Field mustard	cytosol	15.62	18.1

Protein Annotations

EnsemblPlants:Bra025977.1	EnsemblPlants:Bra025977.1-P	EnsemblPlantsGene:Bra025977	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	SMART:SM00979
UniParc:UPI000253F2FE	UniProt:M4EB18	MapMan:11.7.2.1.2	MapMan:15.5.45	:	:

Description

AT1G17380 (E=1e-081) JAZ5, TIFY11A | JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)

Coordinates

chrA06:-:6668929..6670185

Molecular Weight (calculated)

28755.0 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.931

Length

256 amino acids

Sequence
(BLAST)

001: MSRNENAKAQ PLEKSNFTRR CSLLSRYLKE KGSLGNINLG LIRKPNPPGK QHKADSETKT LDVFQRVLKG EPSPGKANED SNLSSQLTIF FGGHVLVYNE
101: FPTDKAKEIL EVAKQAKPVT DINIKTQINV ENNDNKSNMV LPDLNEPTNS VDIINQQNQV VERIARRASL HRFFAKRKDR AVARAPYQVN QNVGQHHYPP
201: KPETAHGRSL KSGQSSKAPE EDVAQTMSQP KPEGDKYMSI ETEEEGQCSK DLQLRL

Best Arabidopsis Sequence Match ( AT1G17380.1 )
(BLAST)

001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL

Arabidopsis Description

TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.