Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010178.1-P | |
| Bra022254.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17380.1 | Bra010178.1-P | AT1G32640.1 | 19309455 |
| AT1G17380.1 | Bra022254.1-P | AT3G17860.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96772 | Canola | nucleus | 92.22 | 93.26 |
| Bra025977.1-P | Field mustard | nucleus | 51.11 | 53.91 |
| AT1G17380.1 | Thale cress | nucleus | 44.07 | 43.43 |
| Bra030986.1-P | Field mustard | nucleus | 43.7 | 39.46 |
| Bra016056.1-P | Field mustard | nucleus | 34.07 | 33.58 |
| Bra008033.1-P | Field mustard | nucleus | 31.11 | 30.77 |
| Bra008172.1-P | Field mustard | nucleus | 24.44 | 27.5 |
| PGSC0003DMT400011155 | Potato | nucleus | 19.63 | 26.5 |
| Bra015880.1-P | Field mustard | cytosol | 23.33 | 25.71 |
| Bra003778.1-P | Field mustard | cytosol | 21.11 | 25.68 |
| Bra025713.1-P | Field mustard | plastid | 23.7 | 25.2 |
| Bra016520.1-P | Field mustard | plastid | 23.7 | 24.71 |
| KRH47640 | Soybean | nucleus | 21.11 | 24.57 |
| Bra031065.1-P | Field mustard | plastid | 24.81 | 24.54 |
| Solyc12g049400.1.1 | Tomato | cytosol | 18.15 | 24.5 |
| KRH06217 | Soybean | nucleus, plastid | 18.89 | 22.17 |
| Bra002338.1-P | Field mustard | cytosol | 16.3 | 21.89 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 22.22 | 20.98 |
| Bra020135.1-P | Field mustard | cytosol | 16.3 | 19.91 |
| Solyc03g122190.2.1 | Tomato | nucleus | 21.11 | 18.45 |
| PGSC0003DMT400058918 | Potato | nucleus | 20.74 | 18.12 |
Protein Annotations
Description
AT1G17380 (E=5e-079) JAZ5, TIFY11A | JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)
Coordinates
chrA08:+:19256054..19257339
Molecular Weight (calculated)
30019.3 Da
IEP (calculated)
8.077
GRAVY (calculated)
-0.933
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRNEDGEAP PPEKSNFTRR CSLLSRYLNE KGSFGNIDLG LVRKPGPDLG LPGNSDQQEK QNVMHKANSE LKALNVLGEP SSSFGGKAKA TNLSEPSEPI
101: SSQLTIFFGG KVLVYNEFPS DKAKEIIQVA KEAKSVTDIN IQTQINVQKD HNKSNIVLPD LNEPTDTADV NQQQQQQNQL VERIARRASL HRFFAKRKDR
201: AVARAPYQVN QNGGGHHYPP KPETVPGQQL EQGQSSQPQR PAQPKPECDK DMLMEVKEEG QCSKDLELRL
101: SSQLTIFFGG KVLVYNEFPS DKAKEIIQVA KEAKSVTDIN IQTQINVQKD HNKSNIVLPD LNEPTDTADV NQQQQQQNQL VERIARRASL HRFFAKRKDR
201: AVARAPYQVN QNGGGHHYPP KPETVPGQQL EQGQSSQPQR PAQPKPECDK DMLMEVKEEG QCSKDLELRL
001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL
Arabidopsis Description
TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.