Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010178.1-P | |
| Bra022254.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72450.1 | Bra010178.1-P | AT1G32640.1 | 19309455 |
| AT1G72450.1 | Bra022254.1-P | AT3G17860.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96409 | Canola | nucleus | 100.0 | 100.0 |
| AT1G72450.1 | Thale cress | nucleus | 49.63 | 50.56 |
| Bra008033.1-P | Field mustard | nucleus | 43.07 | 43.22 |
| Bra025977.1-P | Field mustard | nucleus | 35.77 | 38.28 |
| Bra030986.1-P | Field mustard | nucleus | 40.15 | 36.79 |
| Bra016604.1-P | Field mustard | nucleus | 33.58 | 34.07 |
| KRH47640 | Soybean | nucleus | 20.8 | 24.57 |
| Bra003778.1-P | Field mustard | cytosol | 19.71 | 24.32 |
| Solyc12g049400.1.1 | Tomato | cytosol | 17.52 | 24.0 |
| PGSC0003DMT400011155 | Potato | nucleus | 17.15 | 23.5 |
| Bra015880.1-P | Field mustard | cytosol | 20.8 | 23.27 |
| Bra025713.1-P | Field mustard | plastid | 21.53 | 23.23 |
| Bra031065.1-P | Field mustard | plastid | 22.99 | 23.08 |
| KRH06217 | Soybean | nucleus, plastid | 18.98 | 22.61 |
| Bra008172.1-P | Field mustard | nucleus | 19.71 | 22.5 |
| Bra016520.1-P | Field mustard | plastid | 20.44 | 21.62 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 21.53 | 20.63 |
| PGSC0003DMT400058918 | Potato | nucleus | 21.9 | 19.42 |
| Solyc03g122190.2.1 | Tomato | nucleus | 21.9 | 19.42 |
| Bra002338.1-P | Field mustard | cytosol | 14.23 | 19.4 |
| Bra020135.1-P | Field mustard | cytosol | 14.6 | 18.1 |
Protein Annotations
Description
AT1G72450 (E=7e-100) JAZ6, TIFY11B | JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)
Coordinates
chrA07:-:19629559..19631052
Molecular Weight (calculated)
30598.0 Da
IEP (calculated)
9.615
GRAVY (calculated)
-0.883
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGQAPEKS NFNRRCSLLS RYLKEKGSFG DIVIGLARKS DLELAGKNDH RAQQNAIEKA NISESRPFKL TQKQLSVGET SISSRGKAID VVDLSEPRNV
101: PEPKNSQLTI FFGSKVIVYN EFPEDKAKEI IEAAKEANPV AVDSKKTQNH MNLDINISNK SNVVIPDLNE PTSSGNNDDH QTKEQHQVVE RIARRASLHR
201: FFAKRKDRAV ARAPYQVNQN GGHVPPKPQM VGPSVEAGQH SRQPATPSKP QRHNDMSMEV DEEERCSKDL ELKL
101: PEPKNSQLTI FFGSKVIVYN EFPEDKAKEI IEAAKEANPV AVDSKKTQNH MNLDINISNK SNVVIPDLNE PTSSGNNDDH QTKEQHQVVE RIARRASLHR
201: FFAKRKDRAV ARAPYQVNQN GGHVPPKPQM VGPSVEAGQH SRQPATPSKP QRHNDMSMEV DEEERCSKDL ELKL
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
Arabidopsis Description
TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.