Factsheet for Bra022254.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra003778.1-P
Bra004207.1-P
Bra005000.1-P
Bra008033.1-P
Bra008172.1-P
Bra010178.1-P
Bra012684.1-P
Bra012687.1-P
Bra015880.1-P
Bra016056.1-P
Bra016604.1-P
Bra017044.1-P
Bra017045.1-P
Bra018982.1-P
Bra020748.1-P
Bra022254.1-P
Bra025713.1-P
Bra025977.1-P
Bra026236.1-P
Bra030986.1-P
Bra033501.1-P
Bra033503.1-P
Bra034018.1-P
Bra040107.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17860.1	Bra016604.1-P	AT1G17380.1	19309455
AT3G17860.1	Bra025977.1-P	AT1G17380.1	19309455
AT3G17860.1	Bra030986.1-P	AT1G17380.1	19309455
AT3G17860.1	Bra025713.1-P	AT1G19180.1	19309455
AT3G17860.1	Bra010178.1-P	AT1G32640.1	17637675
AT3G17860.1	Bra010178.1-P	AT1G32640.1	19309455
AT3G17860.1	Bra018982.1-P	AT1G52695.1	21798944
AT3G17860.1	Bra004207.1-P	AT1G67170.1	21798944
AT3G17860.1	Bra034018.1-P	AT1G67170.1	21798944
AT3G17860.1	Bra008033.1-P	AT1G72450.1	19309455
AT3G17860.1	Bra016056.1-P	AT1G72450.1	19309455
AT3G17860.1	Bra003778.1-P	AT1G74950.1	19309455
AT3G17860.1	Bra008172.1-P	AT1G74950.1	19309455
AT3G17860.1	Bra015880.1-P	AT1G74950.1	19309455
AT3G17860.1	Bra000156.1-P	AT2G39940.1	17637675
AT3G17860.1	Bra005000.1-P	AT2G39940.1	17637675
AT3G17860.1	Bra017044.1-P	AT2G39940.1	17637675
AT3G17860.1	Bra017045.1-P	AT2G39940.1	17637675
AT3G17860.1	Bra000156.1-P	AT2G39940.1	18547396
AT3G17860.1	Bra005000.1-P	AT2G39940.1	18547396
AT3G17860.1	Bra017044.1-P	AT2G39940.1	18547396
AT3G17860.1	Bra017045.1-P	AT2G39940.1	18547396
AT3G17860.1	Bra000156.1-P	AT2G39940.1	19309455
AT3G17860.1	Bra005000.1-P	AT2G39940.1	19309455
AT3G17860.1	Bra017044.1-P	AT2G39940.1	19309455
AT3G17860.1	Bra017045.1-P	AT2G39940.1	19309455
AT3G17860.1	Bra020748.1-P	AT3G06430.1	21798944
AT3G17860.1	Bra022254.1-P	AT3G17860.1	19151223
AT3G17860.1	Bra022254.1-P	AT3G17860.1	19309455
AT3G17860.1	Bra033501.1-P	AT4G15700.1	21798944
AT3G17860.1	Bra033503.1-P	AT4G15700.1	21798944
AT3G17860.1	Bra012684.1-P	AT4G17030.1	21798944
AT3G17860.1	Bra012687.1-P	AT4G17030.1	21798944
AT3G17860.1	Bra040107.1-P	AT4G17030.1	21798944
AT3G17860.1	Bra026236.1-P	AT4G17220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92171	Canola	nucleus	91.64	91.37
AT3G17860.1	Thale cress	nucleus	82.09	78.12
Bra021281.1-P	Field mustard	nucleus	80.3	76.2
KRH39044	Soybean	nucleus	35.82	31.09
Bra003947.1-P	Field mustard	cytosol, mitochondrion, plastid	20.3	30.91
PGSC0003DMT400074101	Potato	nucleus	23.28	30.83
VIT_17s0000g02230.t01	Wine grape	nucleus	35.22	29.8
Solyc06g068930.1.1	Tomato	nucleus	21.49	29.27
Solyc03g118540.2.1	Tomato	cytosol	28.36	29.14
Bra007937.1-P	Field mustard	nucleus	20.6	27.6
PGSC0003DMT400036790	Potato	cytosol	31.34	26.92
Bra016193.1-P	Field mustard	nucleus	19.7	26.51
GSMUA_Achr7P12530_001	Banana	nucleus	28.06	22.93
GSMUA_Achr9P15630_001	Banana	cytosol	27.46	22.44
Zm00001d032009_P001	Maize	plastid	8.96	22.39
GSMUA_Achr5P05900_001	Banana	nucleus	26.27	21.2
EER98873	Sorghum	nucleus	25.07	20.59
Zm00001d020409_P002	Maize	nucleus	25.37	20.58
TraesCS5A01G204900.1	Wheat	nucleus	25.07	20.54
Os08t0428400-01	Rice	nucleus	25.97	20.37
TraesCS5D01G211200.2	Wheat	nucleus	24.48	19.62
TraesCS5B01G203400.2	Wheat	nucleus	24.18	19.47
TraesCS5A01G533100.1	Wheat	nucleus	17.31	19.21
TraesCSU01G139000.1	Wheat	nucleus	20.0	18.61
HORVU5Hr1G060730.3	Barley	plastid	23.58	18.41
EES15016	Sorghum	cytosol	22.99	17.99
Zm00001d050365_P006	Maize	nucleus	22.99	17.58
TraesCSU01G139100.1	Wheat	nucleus	18.21	17.28
TraesCS5A01G533000.1	Wheat	nucleus	17.91	16.9
HORVU4Hr1G087520.3	Barley	plastid	16.72	16.18
TraesCS4B01G364700.1	Wheat	nucleus	17.01	16.1
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	20.6	12.8

Protein Annotations

MapMan:15.5.45	EnsemblPlantsGene:Bra022254	EnsemblPlants:Bra022254.1	EnsemblPlants:Bra022254.1-P	InterPro:CCT_CS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0031347	GO:GO:0042802	InterPro:IPR010399
UniProt:M4E0F7	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF14
SMART:SM00979	InterPro:Tify_dom	UniParc:UPI0002547467	SEG:seg	:	:

Description

AT3G17860 (E=1e-135) JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)

Coordinates

chrA05:-:18805578..18808158

Molecular Weight (calculated)

35870.0 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.482

Length

335 amino acids

Sequence
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSK KGSAASSQFL SFRPSQDDRH RKPGNYHLPH SGSFMPSSVA DVYDSNRNTP YSSVQGARMF
101: PNSHQQQESI TVSMARPGLQ SHYPPGGKSF MSNGINSQPF VGVPIMAPPI SVLPAPGSIV GTTDIRSSSK PLGSPAQLTV FYAGSVCVYD DISPDKAKAI
201: MLLAGNGSSM PQAFSPPQTH QQVVHHARAS VDSSAMPPSF MPTVSYLSPE AGSSTNVLGA RGFASTYHNN QTNASTVKPQ TVALPQARKA SLARFLEKRK
301: ERVTSVSPYC LDKKSPTDCR TPISECISSS FSSAT

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.