Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15016 | Sorghum | cytosol | 53.42 | 54.67 |
| Os08t0428400-01 | Rice | nucleus | 41.1 | 42.15 |
| Zm00001d020409_P002 | Maize | nucleus | 33.79 | 35.84 |
| Zm00001d032009_P001 | Maize | plastid | 10.27 | 33.58 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 20.78 | 30.13 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 24.2 | 29.86 |
| TraesCSU01G139100.1 | Wheat | nucleus | 23.97 | 29.75 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 23.97 | 29.66 |
| Bra007937.1-P | Field mustard | nucleus | 16.44 | 28.8 |
| TraesCSU01G139000.1 | Wheat | nucleus | 23.52 | 28.61 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.93 | 27.73 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 25.57 | 27.32 |
| Bra016193.1-P | Field mustard | nucleus | 15.07 | 26.51 |
| HORVU4Hr1G087520.3 | Barley | plastid | 20.55 | 26.01 |
| Solyc01g005440.2.1 | Tomato | cytosol | 18.04 | 25.57 |
| KRH38274 | Soybean | cytosol | 18.49 | 25.39 |
| PGSC0003DMT400081778 | Potato | cytosol | 19.18 | 24.85 |
| Solyc03g118540.2.1 | Tomato | cytosol | 18.49 | 24.85 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 23.06 | 24.63 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 23.29 | 24.58 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 21.23 | 24.22 |
| AT1G48500.1 | Thale cress | nucleus | 17.12 | 24.19 |
| KRH60357 | Soybean | nucleus | 20.32 | 23.99 |
| AT1G70700.3 | Thale cress | cytosol | 14.84 | 23.55 |
| Bra022254.1-P | Field mustard | nucleus | 17.58 | 22.99 |
| PGSC0003DMT400036790 | Potato | cytosol | 20.32 | 22.82 |
| KRH41663 | Soybean | cytosol | 18.95 | 22.49 |
| Solyc06g068930.1.1 | Tomato | nucleus | 12.56 | 22.36 |
| PGSC0003DMT400074101 | Potato | nucleus | 12.79 | 22.13 |
| KRH39044 | Soybean | nucleus | 18.49 | 20.98 |
| Bra021281.1-P | Field mustard | nucleus | 16.89 | 20.96 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 18.95 | 20.96 |
| AT3G17860.1 | Thale cress | nucleus | 16.44 | 20.45 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 24.43 | 19.85 |
Protein Annotations
| EnsemblPlants:Zm00001d050365_P006 | EnsemblPlants:Zm00001d050365_T006 | EnsemblPlantsGene:Zm00001d050365 | EntrezGene:100285509 | InterPro:CCT_CS | InterPro:IPR010399 |
| InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 |
| ProteinID:AQK52416.1 | SEG:seg | SMART:SM00979 | UniParc:UPI000843C2F7 | UniProt:A0A1D6Q1C6 | MapMan:35.1 |
Description
ZIM-transcription factor 35Protein TIFY 6B
Coordinates
chr4:-:83772804..83775016
Molecular Weight (calculated)
45960.8 Da
IEP (calculated)
10.325
GRAVY (calculated)
-0.354
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGAID RAWKCGEAAK EESRSEPDSP AATRWQFAAR SGVAPAFMSF RTEATGEGSE AFSVSELRPA GDAFDGIKKQ SSMLSIYQQQ RQFGHNSSQA
101: TAQQQYPAAA HRQRSQVADY GAAAPHRLPG GGGGGCRLVQ PVSVRHPVPF HQANLMVRSS VSQSFHNQQQ PFTMSNNGFG GSTAGVYGAR NPRNQASTQL
201: TIFYNGSVNV FDNVPVDKAK ELMMLASRAS VPGATPSSEP DSPPVPAPAP AKVNVAEVFP GARQIAVQKP EPCVPHLSSA ATASPVRIVV PQAVAPSRST
301: SHCATEACGS KPAAAPTSQT VSSSRQLAAA SAAAAVTPRA VPQARKASLA RFLEKRKERT LVFILLVSLR RVASVEPYLT SNSKSPLESS DAVGSASAPT
401: KSSSTDVAPA SSHNGGGAEL VRHGGYPRSI SFSTNLQI
101: TAQQQYPAAA HRQRSQVADY GAAAPHRLPG GGGGGCRLVQ PVSVRHPVPF HQANLMVRSS VSQSFHNQQQ PFTMSNNGFG GSTAGVYGAR NPRNQASTQL
201: TIFYNGSVNV FDNVPVDKAK ELMMLASRAS VPGATPSSEP DSPPVPAPAP AKVNVAEVFP GARQIAVQKP EPCVPHLSSA ATASPVRIVV PQAVAPSRST
301: SHCATEACGS KPAAAPTSQT VSSSRQLAAA SAAAAVTPRA VPQARKASLA RFLEKRKERT LVFILLVSLR RVASVEPYLT SNSKSPLESS DAVGSASAPT
401: KSSSTDVAPA SSHNGGGAEL VRHGGYPRSI SFSTNLQI
001: MERDFLGLGS KLSPITVKEE TNEDSAPSRG MMDWSFSSKV GSGPQFLSFG TSQQETRVNT VNDHLLSSAA MDQNQRTYFS SLQEDRVFPG SSQQDQTTIT
101: VSMSEPNYIN SFINHQHLGG SPIMAPPVSV FPAPTTIRSS SKPLPPQLTI FYAGSVLVYQ DIAPEKAQAI MLLAGNGPHA KPVSQPKPQK LVHHSLPTTD
201: PPTMPPSFLP SISYIVSETR SSGSNGVTGL GPTKTKASLA STRNNQTAAF SMAPTVGLPQ TRKASLARFL EKRKERY
101: VSMSEPNYIN SFINHQHLGG SPIMAPPVSV FPAPTTIRSS SKPLPPQLTI FYAGSVLVYQ DIAPEKAQAI MLLAGNGPHA KPVSQPKPQK LVHHSLPTTD
201: PPTMPPSFLP SISYIVSETR SSGSNGVTGL GPTKTKASLA STRNNQTAAF SMAPTVGLPQ TRKASLARFL EKRKERY
Arabidopsis Description
TIFY6AProtein TIFY 6A [Source:UniProtKB/Swiss-Prot;Acc:Q58G47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.