Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006150_P001 | Maize | nucleus | 84.14 | 83.85 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 62.07 | 64.52 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 61.38 | 63.8 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 61.72 | 63.7 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 61.03 | 63.44 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 60.69 | 63.08 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 60.0 | 62.14 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 33.45 | 59.15 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 44.14 | 57.4 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 37.59 | 55.05 |
| Zm00001d031717_P001 | Maize | nucleus | 47.93 | 54.72 |
| Zm00001d052728_P001 | Maize | nucleus | 51.72 | 54.55 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 49.31 | 52.96 |
| Bra017527.1-P | Field mustard | nucleus | 23.45 | 30.09 |
| Bra013263.1-P | Field mustard | nucleus | 23.79 | 25.46 |
| Bra024992.1-P | Field mustard | nucleus | 22.76 | 24.35 |
| VIT_02s0025g02610.t01 | Wine grape | nucleus | 27.93 | 22.44 |
| CDY70013 | Canola | nucleus | 19.31 | 22.22 |
| Solyc10g009290.1.1 | Tomato | nucleus | 33.79 | 21.73 |
| PGSC0003DMT400047220 | Potato | nucleus | 33.1 | 21.24 |
| Solyc01g096370.2.1 | Tomato | nucleus | 32.76 | 21.11 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 30.34 | 20.8 |
| PGSC0003DMT400014097 | Potato | nucleus | 32.76 | 20.79 |
| KRH47834 | Soybean | nucleus | 33.1 | 20.69 |
| PGSC0003DMT400014089 | Potato | nucleus | 26.9 | 20.31 |
| Solyc08g083170.1.1 | Tomato | extracellular | 26.9 | 20.16 |
| PGSC0003DMT400028057 | Potato | nucleus | 26.9 | 20.05 |
| VIT_15s0048g02820.t01 | Wine grape | nucleus | 34.14 | 19.92 |
| KRH06400 | Soybean | nucleus | 31.72 | 19.74 |
| Solyc10g009270.2.1 | Tomato | nucleus | 26.55 | 19.59 |
| PGSC0003DMT400031899 | Potato | plastid | 28.62 | 19.26 |
| Zm00001d038966_P001 | Maize | plastid | 12.07 | 17.16 |
| Zm00001d026009_P001 | Maize | plastid | 12.07 | 17.16 |
| AT5G46830.1 | Thale cress | nucleus | 29.66 | 16.83 |
| Bra017520.1-P | Field mustard | nucleus | 27.59 | 16.06 |
| Bra017523.1-P | Field mustard | nucleus | 27.93 | 15.98 |
| Zm00001d043706_P001 | Maize | nucleus | 25.52 | 15.85 |
| Solyc08g008600.2.1 | Tomato | nucleus | 23.79 | 15.27 |
| Bra010178.1-P | Field mustard | nucleus | 31.38 | 15.17 |
| PGSC0003DMT400015017 | Potato | nucleus | 23.79 | 15.13 |
| Bra024998.1-P | Field mustard | nucleus | 30.0 | 15.0 |
| AT4G17880.1 | Thale cress | nucleus | 30.34 | 14.94 |
| Zm00001d028315_P001 | Maize | cytosol | 6.9 | 14.81 |
| AT1G32640.1 | Thale cress | nucleus | 31.72 | 14.77 |
| AT5G46760.1 | Thale cress | nucleus | 29.31 | 14.36 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 32.76 | 14.33 |
| Zm00001d003604_P001 | Maize | nucleus | 16.55 | 14.29 |
| Solyc08g005050.2.1 | Tomato | nucleus | 22.76 | 14.22 |
| PGSC0003DMT400002963 | Potato | nucleus | 29.31 | 14.21 |
| KRH75613 | Soybean | nucleus | 31.03 | 14.13 |
| KRH74418 | Soybean | nucleus | 31.03 | 14.02 |
| KRH45440 | Soybean | nucleus | 31.38 | 13.91 |
| Zm00001d033413_P001 | Maize | nucleus | 15.17 | 13.84 |
| Zm00001d025462_P001 | Maize | nucleus | 15.52 | 13.64 |
| Zm00001d047017_P001 | Maize | nucleus | 32.07 | 13.23 |
| Zm00001d033848_P004 | Maize | nucleus | 16.55 | 13.19 |
| Zm00001d030028_P001 | Maize | nucleus | 31.72 | 13.05 |
| Zm00001d033412_P001 | Maize | nucleus | 16.55 | 13.01 |
| Zm00001d013370_P001 | Maize | plastid | 16.55 | 12.87 |
| Solyc08g076930.1.1 | Tomato | nucleus | 30.34 | 12.77 |
| PGSC0003DMT400045204 | Potato | nucleus | 30.34 | 12.68 |
| Zm00001d030232_P001 | Maize | nucleus | 13.79 | 12.5 |
| Zm00001d031167_P002 | Maize | nucleus | 16.9 | 12.47 |
| Bra024993.1-P | Field mustard | nucleus | 16.21 | 12.47 |
| Zm00001d024781_P001 | Maize | nucleus | 15.17 | 12.46 |
| Zm00001d028312_P001 | Maize | nucleus | 13.45 | 12.19 |
| KRH39540 | Soybean | nucleus | 30.0 | 11.9 |
| Zm00001d039271_P001 | Maize | nucleus | 25.17 | 11.85 |
| Zm00001d033407_P001 | Maize | nucleus | 14.48 | 11.8 |
| Zm00001d009013_P001 | Maize | nucleus | 24.83 | 11.78 |
| Zm00001d028314_P001 | Maize | nucleus | 7.59 | 11.76 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 17.59 | 9.16 |
| Zm00001d026147_P002 | Maize | nucleus | 18.62 | 8.77 |
| Zm00001d019170_P001 | Maize | nucleus | 18.97 | 8.16 |
| Zm00001d007536_P001 | Maize | plastid | 16.55 | 7.91 |
| Bra013264.1-P | Field mustard | nucleus | 7.24 | 7.07 |
| CDY70012 | Canola | nucleus | 5.17 | 5.62 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A060D4L2 | ProteinID:AIB04503.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| ProteinID:ONM56401.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF68 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000220C2E6 | EnsemblPlantsGene:Zm00001d021164 | EnsemblPlants:Zm00001d021164_P001 | EnsemblPlants:Zm00001d021164_T001 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
bHLH-transcription factor 109Transcription factor bHLH28
Coordinates
chr7:+:144534579..144535451
Molecular Weight (calculated)
30923.5 Da
IEP (calculated)
5.398
GRAVY (calculated)
-0.320
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLLSPCSS FSPPSPPSFF SHAVHPVIEF ASCEVPEQWL LDDLVVAKNE GYDDVDDLWP VRSSLSPDSE VSEQPLPPQP PPPSQQELTS VRAAPAQQQQ
101: RLGKRRGRKP GPRPDGPAVS HVESERQRRE KLNRRFCDLR AAVPTVSRMD KASLLADAAS YIAELRGRVA RLEADSRRAA ASRWDPAVAA AASASTATIG
201: LAGAGGGADE AVEVRMLGPD AAAVRATSAG PHAPARLMGA LRSLELHVQH ACVTRVNGVT VLDVVVDVAT PLQDDDGGLR ATLLQMMQDS
101: RLGKRRGRKP GPRPDGPAVS HVESERQRRE KLNRRFCDLR AAVPTVSRMD KASLLADAAS YIAELRGRVA RLEADSRRAA ASRWDPAVAA AASASTATIG
201: LAGAGGGADE AVEVRMLGPD AAAVRATSAG PHAPARLMGA LRSLELHVQH ACVTRVNGVT VLDVVVDVAT PLQDDDGGLR ATLLQMMQDS
001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
Arabidopsis Description
BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.