Factsheet for Zm00001d002029_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006150_P001
Zm00001d021164_P001
Zm00001d030028_P001
Zm00001d031717_P001
Zm00001d047017_P001
Zm00001d052728_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43440.1	Zm00001d006150_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d021164_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d030028_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d031717_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d047017_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d052728_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d006150_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d021164_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d030028_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d031717_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d047017_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d052728_P001	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82468	Sorghum	nucleus	75.46	74.43
HORVU2Hr1G112360.1	Barley	cytosol, mitochondrion, nucleus	54.17	58.79
TraesCS2A01G506500.1	Wheat	cytosol	54.63	58.71
Zm00001d033972_P002	Maize	cytosol, extracellular, plastid	46.3	57.8
Zm00001d044708_P001	Maize	cytosol, extracellular, plastid	39.81	57.33
TraesCS2B01G534800.1	Wheat	extracellular	47.69	54.79
TraesCS2D01G507200.1	Wheat	nucleus	47.22	49.28
Zm00001d026477_P002	Maize	nucleus	45.83	43.04
Zm00001d046270_P001	Maize	plastid	25.0	39.42
Zm00001d021924_P001	Maize	plastid	25.0	39.42
GSMUA_Achr4P09660_001	Banana	cytosol	38.89	38.36
GSMUA_Achr8P24590_001	Banana	nucleus	35.19	33.33
KRH37606	Soybean	cytosol, nucleus, plastid	31.48	33.01
CDY16574	Canola	cytoskeleton, cytosol, nucleus	30.09	32.66
AT5G20900.1	Thale cress	cytosol	27.78	32.09
KRH12644	Soybean	nucleus	29.63	31.84
Bra020135.1-P	Field mustard	cytosol	31.48	30.77
Bra002338.1-P	Field mustard	cytosol	28.24	30.35
CDX92427	Canola	cytosol	28.24	30.35
CDY09086	Canola	cytosol	31.02	30.32
Zm00001d013855_P002	Maize	plastid	31.02	29.26
AT3G43440.1	Thale cress	cytosol	25.46	23.11
KRH19420	Soybean	nucleus	20.37	21.26
Zm00001d020614_P001	Maize	cytosol, plastid	20.83	20.64
Zm00001d005813_P002	Maize	cytosol, plastid	20.83	19.82
KRH02523	Soybean	cytosol	18.06	19.8
Zm00001d022139_P001	Maize	plastid	21.3	19.74
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	20.37	19.3
Zm00001d006860_P001	Maize	plastid	21.3	17.29

Protein Annotations

EMBL:BT084083	EMBL:KJ727953	EMBL:KU512863	EnsemblPlants:Zm00001d002029_P003	EnsemblPlants:Zm00001d002029_T003	EnsemblPlantsGene:Zm00001d002029
EntrezGene:100384736	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	ncoils:Coil	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:ONM12818.1	SEG:seg
SMART:SM00979	UniParc:UPI0001A4C477	UniProt:C4IZT6	MapMan:15.5.45	:	:

Description

ZIM-transcription factor 32Protein TIFY 3B

Coordinates

chr2:-:4666314..4670063

Molecular Weight (calculated)

22799.0 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.414

Length

216 amino acids

Sequence
(BLAST)

001: MDLLERNIKT ETEETRKEQE RKEEEAEAEA EAGERKTQEP PQQGQGLSLS LANGSGRSGM LPMSNVSANP SQLTIFYGGS VCVYDSVPPE KAQAIMLIAA
101: AAAAAAATKS SAAPTVKPPM VPAATVAPAA VVSPVLTRSP SLQSTSVATG QPQVVAEPSS ICKLQADLPI ARRHSLQRFL EKRRDRVVSK APYSTAKSSD
201: GMESPRIEVT AEGKAQ

Best Arabidopsis Sequence Match ( AT5G20900.1 )
(BLAST)

001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA

Arabidopsis Description

TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.