Factsheet for HORVU2Hr1G112360.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G025420.1
HORVU1Hr1G050560.1
HORVU5Hr1G079900.1
HORVU5Hr1G080040.1
HORVU5Hr1G080080.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43440.1	HORVU0Hr1G025420.1	AT1G32640.1	19309455
AT3G43440.1	HORVU1Hr1G050560.1	AT1G32640.1	19309455
AT3G43440.1	HORVU5Hr1G079900.1	AT1G32640.1	19309455
AT3G43440.1	HORVU5Hr1G080040.1	AT1G32640.1	19309455
AT3G43440.1	HORVU5Hr1G080080.1	AT1G32640.1	19309455
AT5G20900.1	HORVU0Hr1G025420.1	AT1G32640.1	19309455
AT5G20900.1	HORVU1Hr1G050560.1	AT1G32640.1	19309455
AT5G20900.1	HORVU5Hr1G079900.1	AT1G32640.1	19309455
AT5G20900.1	HORVU5Hr1G080040.1	AT1G32640.1	19309455
AT5G20900.1	HORVU5Hr1G080080.1	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G506500.1	Wheat	cytosol	81.91	81.09
TraesCS2B01G534800.1	Wheat	extracellular	73.37	77.66
TraesCS2D01G507200.1	Wheat	nucleus	77.89	74.88
Zm00001d033972_P002	Maize	cytosol, extracellular, plastid	52.26	60.12
Zm00001d002029_P003	Maize	nucleus	58.79	54.17
Zm00001d044708_P001	Maize	cytosol, extracellular, plastid	40.2	53.33
OQU82468	Sorghum	nucleus	57.79	52.51
Os04t0653000-01	Rice	cytosol, nucleus, plastid	53.77	49.54
Zm00001d026477_P002	Maize	nucleus	43.72	37.83
GSMUA_Achr4P09660_001	Banana	cytosol	37.19	33.79
GSMUA_Achr8P24590_001	Banana	nucleus	38.19	33.33
KRH37606	Soybean	cytosol, nucleus, plastid	31.16	30.1
AT5G20900.1	Thale cress	cytosol	27.64	29.41
KRH12644	Soybean	nucleus	29.65	29.35
CDX92427	Canola	cytosol	29.65	29.35
Bra002338.1-P	Field mustard	cytosol	29.15	28.86
Bra020135.1-P	Field mustard	cytosol	31.66	28.51
CDY16574	Canola	cytoskeleton, cytosol, nucleus	27.64	27.64
CDY09086	Canola	cytosol	30.15	27.15
KRH19420	Soybean	nucleus	23.62	22.71
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	25.63	21.34
KRH02523	Soybean	cytosol	20.1	20.3
AT3G43440.1	Thale cress	cytosol	23.62	19.75
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	24.62	16.61

Protein Annotations

MapMan:15.5.45	EMBL:AK366531	InterPro:CCT_CS	UniProt:F2DRL3	GO:GO:0000003	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009719	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010582	GO:GO:0048449	GO:GO:2000022	EnsemblPlantsGene:HORVU2Hr1G112360
EnsemblPlants:HORVU2Hr1G112360.1	InterPro:IPR010399	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	SMART:SM00979	InterPro:Tify_dom	UniParc:UPI0002007499	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DRL3]

Coordinates

chrchr2H:+:725648938..725655525

Molecular Weight (calculated)

20816.8 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.474

Length

199 amino acids

Sequence
(BLAST)

001: MDLLERSATT IKPEAGEAQC KEGERKEQEQ QETQQQGRPP LANGSSRSGM LPMSSPPANP GQLTIFYGGS VCVYDSVPPE KAQAIMLIAA AAAAASKSNG
101: PAAVKPPVMS ATNAIQAMLT RSLSLQSTSV ANGQPQPAAD PSSICKLQAD LPIARRHSLQ RFLEKRRDRV VSKAPYGTGK PSEGMGASGM EAVAEGKAQ

Best Arabidopsis Sequence Match ( AT5G20900.1 )
(BLAST)

001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA

Arabidopsis Description

TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.