Factsheet for Bra002338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010178.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20900.1	Bra010178.1-P	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92427	Canola	cytosol	88.56	88.56
AT5G20900.1	Thale cress	cytosol	52.24	56.15
Bra020135.1-P	Field mustard	cytosol	52.24	47.51
Zm00001d044708_P001	Maize	cytosol, extracellular, plastid	26.87	36.0
KRH12644	Soybean	nucleus	34.33	34.33
KRH37606	Soybean	cytosol, nucleus, plastid	34.83	33.98
GSMUA_Achr5P22010_001	Banana	cytosol	24.88	30.49
GSMUA_Achr7P15650_001	Banana	plastid	23.38	30.32
TraesCS2B01G534800.1	Wheat	extracellular	28.36	30.32
Zm00001d033972_P002	Maize	cytosol, extracellular, plastid	25.87	30.06
GSMUA_Achr10P...	Banana	cytosol	26.37	29.94
Os04t0653000-01	Rice	cytosol, nucleus, plastid	31.34	29.17
HORVU2Hr1G112360.1	Barley	cytosol, mitochondrion, nucleus	28.86	29.15
TraesCS2A01G506500.1	Wheat	cytosol	28.86	28.86
Zm00001d002029_P003	Maize	nucleus	30.35	28.24
GSMUA_Achr8P23800_001	Banana	cytosol	25.87	28.11
TraesCS2D01G507200.1	Wheat	nucleus	27.86	27.05
GSMUA_Achr4P09660_001	Banana	cytosol	28.36	26.03
OQU82468	Sorghum	nucleus	28.36	26.03
GSMUA_Achr8P24590_001	Banana	nucleus	28.86	25.44
KRH02523	Soybean	cytosol	23.88	24.37
Zm00001d021924_P001	Maize	plastid	16.42	24.09
Zm00001d046270_P001	Maize	plastid	16.42	24.09
Zm00001d026477_P002	Maize	nucleus	26.37	23.04
KRH19420	Soybean	nucleus	22.89	22.22
Bra003778.1-P	Field mustard	cytosol	23.88	21.62
Bra008172.1-P	Field mustard	nucleus	23.38	19.58
Zm00001d013855_P002	Maize	plastid	21.39	18.78
Bra008033.1-P	Field mustard	nucleus	25.37	18.68
Bra025713.1-P	Field mustard	plastid	23.38	18.5
Bra015880.1-P	Field mustard	cytosol	22.39	18.37
Bra016520.1-P	Field mustard	plastid	22.89	17.76
Bra025977.1-P	Field mustard	nucleus	22.39	17.58
Bra031065.1-P	Field mustard	plastid	22.39	16.48
Bra016604.1-P	Field mustard	nucleus	21.89	16.3
Bra016056.1-P	Field mustard	nucleus	19.4	14.23
Bra030986.1-P	Field mustard	nucleus	19.9	13.38

Protein Annotations

EnsemblPlants:Bra002338.1	EnsemblPlants:Bra002338.1-P	EnsemblPlantsGene:Bra002338	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	SEG:seg
SMART:SM00979	UniParc:UPI0002544A3D	UniProt:M4CDQ7	MapMan:15.5.45	:	:

Description

AT5G20900 (E=2e-040) JAZ12, TIFY3B | JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)

Coordinates

chrA10:-:10225401..10226444

Molecular Weight (calculated)

20956.6 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.376

Length

201 amino acids

Sequence
(BLAST)

001: MVKVEEEARA SVEGGCGVGG EEIGGNGTVH GSIAGSVAGE GAEKPIHGAG CIEVPSSEPD APTTRPNQLT IFFGGKVRVF DGIPADKIQE IIRIAAAAAK
101: SIETKNSANT SPVASPALNR APSLSSTSNA AASPAAQSFP VHPISFCRSA ADLPIARRHS LQRFLEKRRD RLVSKNPYPA SDKKTDVPRD DASIKEEYPT
201: A

Best Arabidopsis Sequence Match ( AT5G20900.1 )
(BLAST)

001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA

Arabidopsis Description

TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.