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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000156.1-P
Bra005000.1-P
Bra010178.1-P
Bra017044.1-P
Bra017045.1-P
Bra022254.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G74950.1 Bra010178.1-P AT1G32640.1 19309455
AT1G74950.1 Bra000156.1-P AT2G39940.1 18547396
AT1G74950.1 Bra005000.1-P AT2G39940.1 18547396
AT1G74950.1 Bra017044.1-P AT2G39940.1 18547396
AT1G74950.1 Bra017045.1-P AT2G39940.1 18547396
AT1G74950.1 Bra022254.1-P AT3G17860.1 19309455
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX85865 Canola cytosol 75.23 74.55
CDX68156 Canola cytosol 55.86 68.51
AT1G74950.1 Thale cress cytosol 55.86 49.8
Bra008172.1-P Field mustard nucleus 52.7 48.75
Bra015880.1-P Field mustard cytosol 51.35 46.53
Bra025713.1-P Field mustard plastid 41.44 36.22
Bra016520.1-P Field mustard plastid 41.89 35.91
Bra031065.1-P Field mustard plastid 43.24 35.16
VIT_11s0016g00710.t01 Wine grape cytosol, plastid 38.29 31.72
GSMUA_Achr6P31050_001 Banana cytosol 28.83 30.05
Solyc07g042170.2.1 Tomato cytosol 28.38 29.17
Os03t0402800-01 Rice plastid 29.73 28.95
PGSC0003DMT400075155 Potato nucleus 27.93 28.84
GSMUA_Achr2P21770_001 Banana mitochondrion 28.38 28.51
GSMUA_Achr3P10270_001 Banana cytosol 28.83 28.32
GSMUA_Achr11P... Banana cytosol 28.83 27.59
Zm00001d022139_P001 Maize plastid 28.83 27.47
GSMUA_Achr3P02140_001 Banana mitochondrion 25.68 27.27
EER97533 Sorghum plastid 28.83 27.23
Zm00001d029448_P001 Maize cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 27.93 27.19
GSMUA_Achr10P... Banana cytosol 19.82 27.16
GSMUA_Achr8P16780_001 Banana cytosol 30.63 26.88
PGSC0003DMT400007592 Potato nucleus 30.63 26.77
Solyc12g009220.1.1 Tomato nucleus 30.18 26.59
GSMUA_Achr9P14370_001 Banana cytosol 31.53 26.42
TraesCS2B01G195600.1 Wheat plastid 27.03 25.97
TraesCS2D01G176800.1 Wheat plastid 27.03 25.97
HORVU2Hr1G031310.9 Barley cytosol, mitochondrion, plastid 27.93 25.94
GSMUA_Achr5P22110_001 Banana mitochondrion 28.83 25.91
GSMUA_Achr5P05170_001 Banana cytosol, mitochondrion, nucleus 27.93 25.73
Os07t0615200-01 Rice mitochondrion 27.93 25.41
TraesCS2A01G169300.1 Wheat plastid 26.13 25.11
GSMUA_Achr3P05920_001 Banana nucleus 28.38 25.1
EER92157 Sorghum plastid 25.68 25.0
GSMUA_AchrUn_... Banana nucleus 27.48 24.7
EER98969 Sorghum cytosol 24.32 24.43
Bra002338.1-P Field mustard cytosol 21.62 23.88
GSMUA_Achr7P19850_001 Banana cytosol 25.68 23.55
TraesCS5D01G219300.2 Wheat nucleus 24.32 23.48
TraesCS5B01G211000.1 Wheat nucleus 23.87 23.04
Zm00001d006860_P001 Maize plastid 27.48 22.93
Zm00001d020614_P001 Maize cytosol, plastid 22.07 22.48
Zm00001d005813_P002 Maize cytosol, plastid 22.97 22.47
Bra008033.1-P Field mustard nucleus 26.58 21.61
Bra016604.1-P Field mustard nucleus 25.68 21.11
Os09t0439200-01 Rice plastid 21.62 20.69
Bra030986.1-P Field mustard nucleus 27.48 20.4
Bra020135.1-P Field mustard cytosol 20.27 20.36
Bra025977.1-P Field mustard nucleus 23.42 20.31
Bra016056.1-P Field mustard nucleus 24.32 19.71
TraesCS5A01G212800.1 Wheat plastid 25.68 19.26
HORVU5Hr1G062290.6 Barley mitochondrion, plastid 24.77 18.64
GSMUA_Achr1P21870_001 Banana mitochondrion 27.48 17.28
Protein Annotations
EnsemblPlants:Bra003778.1EnsemblPlants:Bra003778.1-PEnsemblPlantsGene:Bra003778InterPro:CCT_CSInterPro:IPR010399InterPro:Tify_dom
PANTHER:PTHR33077PANTHER:PTHR33077:SF5PFAM:PF06200PFAM:PF09425PFscan:PS51320SMART:SM00979
UniParc:UPI0002541643UniProt:M4CHU5MapMan:11.7.2.1.2MapMan:15.5.45::
Description
AT1G74950 (E=6e-055) JAZ2, TIFY10B | TIFY10B
Coordinates
chrA07:+:15021339..15022508
Molecular Weight (calculated)
24321.6 Da
IEP (calculated)
9.416
GRAVY (calculated)
-0.678
Length
222 amino acids
Sequence
(BLAST)
001: MSSSAECWEF SGPKLPEKPS FSQTCSRLSR YLKEKGSCGD LSFSMTSKPD VNGINSKAAQ DVKLQNDMFP CQSSFSSSFG VKEEVVKITE TKPVKPESQS
101: APLTLFYSGQ VMLFDDFPAE KAKQVIDLAN KGNANGFTAE LNNNQSAYTK NIAKNQKEIA SIPRPVPSPA KSPAQEPIQT NTSSLASELP IARRASLHRF
201: LEKRKDRITS KGPYQKEGST EA
Best Arabidopsis Sequence Match ( AT1G74950.1 )
(BLAST)
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.