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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000156.1-P
Bra005000.1-P
Bra010178.1-P
Bra017044.1-P
Bra017045.1-P
Bra022254.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G74950.1 Bra010178.1-P AT1G32640.1 19309455
AT1G74950.1 Bra000156.1-P AT2G39940.1 18547396
AT1G74950.1 Bra005000.1-P AT2G39940.1 18547396
AT1G74950.1 Bra017044.1-P AT2G39940.1 18547396
AT1G74950.1 Bra017045.1-P AT2G39940.1 18547396
AT1G74950.1 Bra022254.1-P AT3G17860.1 19309455
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45408 Canola cytosol 99.18 99.18
Bra008172.1-P Field mustard nucleus 63.27 64.58
AT1G74950.1 Thale cress cytosol 60.0 59.04
Bra003778.1-P Field mustard cytosol 46.53 51.35
Bra025713.1-P Field mustard plastid 48.16 46.46
Bra016520.1-P Field mustard plastid 48.98 46.33
Bra031065.1-P Field mustard plastid 51.02 45.79
GSMUA_Achr2P21770_001 Banana mitochondrion 33.47 37.1
VIT_11s0016g00710.t01 Wine grape cytosol, plastid 39.18 35.82
GSMUA_Achr6P31050_001 Banana cytosol 31.02 35.68
Zm00001d022139_P001 Maize plastid 32.24 33.91
Solyc07g042170.2.1 Tomato cytosol 29.8 33.8
PGSC0003DMT400075155 Potato nucleus 28.57 32.56
EER97533 Sorghum plastid 30.2 31.49
GSMUA_Achr3P10270_001 Banana cytosol 28.98 31.42
GSMUA_Achr5P22110_001 Banana mitochondrion 31.02 30.77
Os03t0402800-01 Rice plastid 28.57 30.7
EER92157 Sorghum plastid 28.16 30.26
GSMUA_Achr9P14370_001 Banana cytosol 32.65 30.19
Solyc12g009220.1.1 Tomato nucleus 31.02 30.16
PGSC0003DMT400007592 Potato nucleus 31.02 29.92
GSMUA_Achr3P05920_001 Banana nucleus 30.61 29.88
TraesCS2B01G195600.1 Wheat plastid 28.16 29.87
TraesCS2D01G176800.1 Wheat plastid 28.16 29.87
Zm00001d029448_P001 Maize cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 27.76 29.82
GSMUA_Achr3P02140_001 Banana mitochondrion 24.9 29.19
GSMUA_Achr5P05170_001 Banana cytosol, mitochondrion, nucleus 28.57 29.05
Zm00001d006860_P001 Maize plastid 31.43 28.95
HORVU2Hr1G031310.9 Barley cytosol, mitochondrion, plastid 28.16 28.87
Os07t0615200-01 Rice mitochondrion 28.57 28.69
GSMUA_Achr10P... Banana cytosol 18.78 28.4
TraesCS2A01G169300.1 Wheat plastid 26.53 28.14
GSMUA_Achr7P19850_001 Banana cytosol 27.76 28.1
GSMUA_Achr11P... Banana cytosol 26.53 28.02
GSMUA_Achr8P16780_001 Banana cytosol 28.57 27.67
EER98969 Sorghum cytosol 24.9 27.6
GSMUA_AchrUn_... Banana nucleus 27.76 27.53
TraesCS5B01G211000.1 Wheat nucleus 24.9 26.52
TraesCS5D01G219300.2 Wheat nucleus 24.9 26.52
Zm00001d005813_P002 Maize cytosol, plastid 23.67 25.55
Zm00001d020614_P001 Maize cytosol, plastid 22.45 25.23
Os09t0439200-01 Rice plastid 23.27 24.57
Bra016604.1-P Field mustard nucleus 25.71 23.33
Bra020135.1-P Field mustard cytosol 20.41 22.62
Bra002338.1-P Field mustard cytosol 18.37 22.39
TraesCS5A01G212800.1 Wheat plastid 26.12 21.62
GSMUA_Achr1P21870_001 Banana mitochondrion 31.02 21.53
Bra016056.1-P Field mustard nucleus 23.27 20.8
Bra030986.1-P Field mustard nucleus 25.31 20.74
Bra025977.1-P Field mustard nucleus 21.63 20.7
HORVU5Hr1G062290.6 Barley mitochondrion, plastid 24.9 20.68
Bra008033.1-P Field mustard nucleus 22.86 20.51
Protein Annotations
EnsemblPlants:Bra015880.1EnsemblPlants:Bra015880.1-PEnsemblPlantsGene:Bra015880InterPro:CCT_CSInterPro:IPR010399InterPro:Tify_dom
PANTHER:PTHR33077PANTHER:PTHR33077:SF5PFAM:PF06200PFAM:PF09425PFscan:PS51320SEG:seg
SMART:SM00979UniParc:UPI0002541EF5UniProt:M4DHA3MapMan:11.7.2.1.2MapMan:15.5.45:
Description
AT1G74950 (E=4e-075) JAZ2, TIFY10B | TIFY10B
Coordinates
chrA07:-:20377550..20378698
Molecular Weight (calculated)
26811.7 Da
IEP (calculated)
9.619
GRAVY (calculated)
-0.595
Length
245 amino acids
Sequence
(BLAST)
001: MSSSAECWEF SGERKRLLEK KPSFSQTCSR LSRYLKEKGS FGDLSLGMTC NGGLAVTRQQ PTMMNLFPVE DSSDVKQKND VIPRQLSFSS SSSSGAKEEV
101: EKITETKSVK VESQSSVPLT IFYGGQVMVF DDFPAEKAKQ VIDLAHKGSA KSFTAELNRN QSAYTQKEIA STTPVPVPSP VKTTAPEPTQ TNKSSLACEL
201: PIARRASLHR FLEKRKDRIS SKAPYQIDGS TEASSKPNTA LLGSQ
Best Arabidopsis Sequence Match ( AT1G74950.1 )
(BLAST)
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.