Factsheet for VIT_11s0016g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01320.t01
VIT_04s0008g00110.t01
VIT_10s0003g03790.t01
VIT_10s0003g03800.t01
VIT_10s0003g03810.t01
VIT_11s0016g00710.t01
VIT_13s0019g03380.t01
VIT_15s0046g00320.t01
VIT_16s0098g00600.t01
VIT_17s0000g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19180.1	VIT_15s0046g00320.t01	AT1G01260.1	21798944
AT1G19180.1	VIT_11s0016g00710.t01	AT1G19180.1	19309455
AT1G19180.1	VIT_11s0016g00710.t01	AT1G19180.1	21798944
AT1G19180.1	VIT_04s0008g00110.t01	AT1G30135.1	19309455
AT1G19180.1	VIT_10s0003g03790.t01	AT1G30135.1	19309455
AT1G19180.1	VIT_10s0003g03800.t01	AT1G30135.1	19309455
AT1G19180.1	VIT_10s0003g03810.t01	AT1G30135.1	19309455
AT1G19180.1	VIT_02s0012g01320.t01	AT1G32640.1	18547396
AT1G19180.1	VIT_02s0012g01320.t01	AT1G32640.1	19309455
AT1G19180.1	VIT_17s0000g02230.t01	AT1G48500.1	19309455
AT1G19180.1	VIT_13s0019g03380.t01	AT2G39940.1	17637677
AT1G19180.1	VIT_13s0019g03380.t01	AT2G39940.1	18547396
AT1G19180.1	VIT_17s0000g02230.t01	AT3G17860.1	19309455
AT1G19180.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT1G74950.1	VIT_02s0012g01320.t01	AT1G32640.1	19309455
AT1G74950.1	VIT_13s0019g03380.t01	AT2G39940.1	18547396
AT1G74950.1	VIT_17s0000g02230.t01	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46022	Canola	nucleus	40.3	45.0
Bra008172.1-P	Field mustard	nucleus	39.93	44.58
CDY26697	Canola	plastid	40.67	43.08
CDY41023	Canola	plastid	40.67	42.91
Bra025713.1-P	Field mustard	plastid	40.67	42.91
Solyc07g042170.2.1	Tomato	cytosol	34.33	42.59
CDX83781	Canola	plastid	41.79	42.42
CDX96675	Canola	plastid	41.42	42.21
Bra016520.1-P	Field mustard	plastid	40.67	42.08
CDY37269	Canola	nucleus	37.69	42.08
AT1G74950.1	Thale cress	cytosol	38.43	41.37
PGSC0003DMT400075155	Potato	nucleus	32.84	40.93
AT1G19180.1	Thale cress	cytosol	38.43	40.71
CDX73127	Canola	cytosol	36.94	40.41
Bra031065.1-P	Field mustard	plastid	41.04	40.29
CDY45408	Canola	cytosol	36.19	39.59
Bra015880.1-P	Field mustard	cytosol	35.82	39.18
GSMUA_Achr2P21770_001	Banana	mitochondrion	31.72	38.46
Bra003778.1-P	Field mustard	cytosol	31.72	38.29
CDX85865	Canola	cytosol	31.72	37.95
EER97533	Sorghum	plastid	32.46	37.02
PGSC0003DMT400007592	Potato	nucleus	34.33	36.22
Solyc12g009220.1.1	Tomato	nucleus	33.96	36.11
CDX68156	Canola	cytosol	23.51	34.81
GSMUA_Achr3P02140_001	Banana	mitochondrion	26.87	34.45
Zm00001d022139_P001	Maize	plastid	29.85	34.33
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	30.22	33.89
TraesCS2B01G195600.1	Wheat	plastid	29.1	33.77
CDX73289	Canola	cytosol	23.51	33.51
Os07t0615200-01	Rice	mitochondrion	30.22	33.2
TraesCS2D01G176800.1	Wheat	plastid	28.36	32.9
Os03t0402800-01	Rice	plastid	27.99	32.89
TraesCS2A01G169300.1	Wheat	plastid	27.61	32.03
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	33.96	31.82
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.87	31.58
GSMUA_Achr11P...	Banana	cytosol	27.24	31.47
GSMUA_Achr9P14370_001	Banana	cytosol	30.97	31.32
EER98969	Sorghum	cytosol	25.75	31.22
EER92157	Sorghum	plastid	26.49	31.14
TraesCS5D01G219300.2	Wheat	nucleus	26.49	30.87
Zm00001d006860_P001	Maize	plastid	30.6	30.83
GSMUA_Achr3P05920_001	Banana	nucleus	28.73	30.68
Os09t0439200-01	Rice	plastid	26.49	30.6
GSMUA_Achr3P10270_001	Banana	cytosol	25.75	30.53
GSMUA_Achr6P31050_001	Banana	cytosol	24.25	30.52
GSMUA_Achr5P22110_001	Banana	mitochondrion	27.61	29.96
GSMUA_Achr8P16780_001	Banana	cytosol	27.99	29.64
TraesCS5B01G211000.1	Wheat	nucleus	25.37	29.57
GSMUA_Achr7P19850_001	Banana	cytosol	26.49	29.34
GSMUA_AchrUn_...	Banana	nucleus	26.87	29.15
Zm00001d005813_P002	Maize	cytosol, plastid	24.63	29.07
Zm00001d020614_P001	Maize	cytosol, plastid	23.51	28.9
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	25.75	28.63
GSMUA_Achr10P...	Banana	cytosol	16.04	26.54
TraesCS5A01G212800.1	Wheat	plastid	26.87	24.32
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	26.12	23.73
GSMUA_Achr1P21870_001	Banana	mitochondrion	30.97	23.51
VIT_12s0035g00900.t01	Wine grape	nucleus	17.91	23.19
CDX81917	Canola	plastid	40.67	21.46
CDY21679	Canola	plastid	42.16	20.73

Protein Annotations

EntrezGene:100254231	wikigene:100254231	MapMan:11.7.2.1.2	MapMan:15.5.45	ProteinID:CCB51381	ProteinID:CCB51381.1
InterPro:CCT_CS	UniProt:F6HGN3	EMBL:FN595756	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719
GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EntrezGene:LOC100254231
wikigene:LOC100254231	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF13
SMART:SM00979	InterPro:Tify_dom	UniParc:UPI00015C9100	ArrayExpress:VIT_11s0016g00710	EnsemblPlantsGene:VIT_11s0016g00710	EnsemblPlants:VIT_11s0016g00710.t01
unigene:Vvi.7525	RefSeq:XP_002277157	RefSeq:XP_002277157.1	:	:	:

Description

No Description!

Coordinates

chr11:-:683154..685552

Molecular Weight (calculated)

28566.1 Da

IEP (calculated)

10.477

GRAVY (calculated)

-0.448

Length

268 amino acids

Sequence
(BLAST)

001: MSSSSDIADS GRFTGQRAPA RGPEKSSFSQ TCSLLSQYIK EKGTFGDLSL GMTCSLEGNG TPESLRQTAT TTTMNLFPMT ERSAGVSGIP ARNMNLKSMN
101: LFPQQAGFGS SVSKDDAPKI VNSSVKKSGN VEPQTAQMTI FYGGQVIVFN DFPADKAKEV MRLAGMGSSP VPSTTVKNPI DAGGMAPSNP NVVPNFANSL
201: IQERIQRPAQ PVACELPIAR KASLHRFLEK RKDRITARAP YNISNSPAGP HKPAESKSWL GLAAKSPK

Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.