Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01320.t01 | |
| VIT_11s0016g00710.t01 | |
| VIT_15s0046g00320.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g03790.t01 | Wine grape | cytosol | 94.9 | 73.23 |
| VIT_10s0003g03800.t01 | Wine grape | cytosol | 93.88 | 72.44 |
| VIT_10s0003g03810.t01 | Wine grape | nucleus | 68.37 | 69.79 |
| PGSC0003DMT400002991 | Potato | nucleus | 52.04 | 48.11 |
| PGSC0003DMT400022650 | Potato | cytosol | 55.1 | 46.96 |
| Solyc08g036620.2.1 | Tomato | nucleus | 48.98 | 46.6 |
| PGSC0003DMT400002985 | Potato | cytosol | 52.04 | 43.97 |
| KRH21078 | Soybean | cytosol | 61.22 | 43.48 |
| KRH58647 | Soybean | cytosol | 59.18 | 43.28 |
| KRH11175 | Soybean | cytosol | 57.14 | 42.11 |
| Solyc08g036640.2.1 | Tomato | nucleus | 47.96 | 41.96 |
| PGSC0003DMT400022651 | Potato | mitochondrion, nucleus | 51.02 | 40.32 |
| KRH42552 | Soybean | nucleus | 60.2 | 39.33 |
| Bra021923.1-P | Field mustard | cytosol | 46.94 | 39.32 |
| CDY43664 | Canola | nucleus | 46.94 | 38.66 |
| AT1G30135.1 | Thale cress | nucleus | 51.02 | 38.17 |
| GSMUA_Achr9P10340_001 | Banana | cytosol | 48.98 | 37.8 |
| Solyc08g036660.2.1 | Tomato | mitochondrion | 47.96 | 37.01 |
| GSMUA_Achr7P01220_001 | Banana | extracellular | 44.9 | 36.97 |
| Bra005407.1-P | Field mustard | cytosol | 42.86 | 36.21 |
| CDY17268 | Canola | cytosol | 42.86 | 36.21 |
| CDX84301 | Canola | cytosol | 42.86 | 36.21 |
| CDX99884 | Canola | nucleus | 45.92 | 34.09 |
| Bra022981.1-P | Field mustard | nucleus | 38.78 | 33.63 |
| GSMUA_Achr2P12970_001 | Banana | cytosol | 45.92 | 33.09 |
| Bra032362.1-P | Field mustard | nucleus | 44.9 | 33.08 |
| CDX90230 | Canola | nucleus | 43.88 | 33.08 |
| Bra010794.1-P | Field mustard | nucleus | 43.88 | 33.08 |
| GSMUA_Achr6P31200_001 | Banana | nucleus | 50.0 | 32.89 |
| CDX84639 | Canola | nucleus | 37.76 | 32.46 |
| CDY26288 | Canola | nucleus | 43.88 | 32.33 |
| CDY51470 | Canola | nucleus | 42.86 | 32.31 |
| CDX79568 | Canola | nucleus | 36.73 | 31.86 |
| AT2G34600.1 | Thale cress | nucleus | 47.96 | 31.76 |
| GSMUA_Achr4P31480_001 | Banana | nucleus | 44.9 | 29.14 |
| GSMUA_Achr7P01230_001 | Banana | nucleus | 54.08 | 25.12 |
| GSMUA_Achr3P23250_001 | Banana | cytosol | 39.8 | 21.91 |
Protein Annotations
| EntrezGene:100266330 | wikigene:100266330 | MapMan:15.5.45 | ProteinID:CBI18787 | ProteinID:CBI18787.3 | InterPro:CCT_CS |
| UniProt:D7SSZ7 | EMBL:FN595014 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0031347 | GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | EntrezGene:LOC100266330 | wikigene:LOC100266330 |
| PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF17 | SMART:SM00979 |
| InterPro:Tify_dom | UniParc:UPI0001BE1608 | ArrayExpress:VIT_04s0008g00110 | EnsemblPlantsGene:VIT_04s0008g00110 | EnsemblPlants:VIT_04s0008g00110.t01 | RefSeq:XP_003634826 |
| RefSeq:XP_003634826.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4_random:+:39974..40850
Molecular Weight (calculated)
11259.5 Da
IEP (calculated)
10.062
GRAVY (calculated)
-0.777
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: METGRGSPQE QPQQQQLTIF YNGRICVCDV TELQARAILL FASREMEEKT RTPTASDAIS PSLHSQIYSP TGLSMKRSLQ RFLQKRKNRM EATSPYHR
001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
Arabidopsis Description
TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.