Factsheet for VIT_10s0003g03810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01320.t01
VIT_11s0016g00710.t01
VIT_15s0046g00320.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	VIT_15s0046g00320.t01	AT1G01260.1	21798944
AT1G30135.1	VIT_11s0016g00710.t01	AT1G19180.1	19309455
AT1G30135.1	VIT_11s0016g00710.t01	AT1G19180.1	21798944
AT1G30135.1	VIT_02s0012g01320.t01	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g00110.t01	Wine grape	cytosol	69.79	68.37
VIT_10s0003g03800.t01	Wine grape	cytosol	71.88	54.33
VIT_10s0003g03790.t01	Wine grape	cytosol	71.88	54.33
PGSC0003DMT400002991	Potato	nucleus	51.04	46.23
Solyc08g036620.2.1	Tomato	nucleus	47.92	44.66
PGSC0003DMT400022650	Potato	cytosol	51.04	42.61
PGSC0003DMT400002985	Potato	cytosol	50.0	41.38
Solyc08g036640.2.1	Tomato	nucleus	45.83	39.29
KRH21078	Soybean	cytosol	56.25	39.13
KRH11175	Soybean	cytosol	53.12	38.35
KRH58647	Soybean	cytosol	53.12	38.06
Bra021923.1-P	Field mustard	cytosol	45.83	37.61
PGSC0003DMT400022651	Potato	mitochondrion, nucleus	47.92	37.1
CDY43664	Canola	nucleus	45.83	36.97
GSMUA_Achr9P10340_001	Banana	cytosol	46.88	35.43
GSMUA_Achr7P01220_001	Banana	extracellular	43.75	35.29
KRH42552	Soybean	nucleus	54.17	34.67
Solyc08g036660.2.1	Tomato	mitochondrion	45.83	34.65
GSMUA_Achr2P12970_001	Banana	cytosol	48.96	34.56
CDX84301	Canola	cytosol	41.67	34.48
CDY17268	Canola	cytosol	41.67	34.48
Bra005407.1-P	Field mustard	cytosol	41.67	34.48
AT1G30135.1	Thale cress	nucleus	44.79	32.82
Bra022981.1-P	Field mustard	nucleus	38.54	32.74
Bra010794.1-P	Field mustard	nucleus	43.75	32.31
CDX90230	Canola	nucleus	43.75	32.31
CDX99884	Canola	nucleus	43.75	31.82
CDX84639	Canola	nucleus	37.5	31.58
CDY51470	Canola	nucleus	42.71	31.54
CDX79568	Canola	nucleus	36.46	30.97
Bra032362.1-P	Field mustard	nucleus	42.71	30.83
CDY26288	Canola	nucleus	41.67	30.08
GSMUA_Achr4P31480_001	Banana	nucleus	46.88	29.8
AT2G34600.1	Thale cress	nucleus	44.79	29.05
GSMUA_Achr6P31200_001	Banana	nucleus	44.79	28.86
GSMUA_Achr7P01230_001	Banana	nucleus	53.12	24.17
GSMUA_Achr3P23250_001	Banana	cytosol	35.42	19.1

Protein Annotations

EntrezGene:100256656	wikigene:100256656	MapMan:15.5.45	ProteinID:CBI30921	ProteinID:CBI30921.3	InterPro:CCT_CS
UniProt:D7TK99	EMBL:FN595992	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EntrezGene:LOC100256656	wikigene:LOC100256656
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	SMART:SM00979
TIGR:TC60473	InterPro:Tify_dom	UniParc:UPI0001BE34FD	ArrayExpress:VIT_10s0003g03810	EnsemblPlantsGene:VIT_10s0003g03810	EnsemblPlants:VIT_10s0003g03810.t01
unigene:Vvi.13283	RefSeq:XP_002277952	RefSeq:XP_002277952.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:6481637..6482508

Molecular Weight (calculated)

10802.1 Da

IEP (calculated)

11.637

GRAVY (calculated)

-0.864

Length

96 amino acids

Sequence
(BLAST)

1: MRGGGGGGGS PQEQQQRQQL TIFYNGRICV SDVTELRARA IILAASREME ERKRAPLSPS MQSQLCGPSG VSMKRSLHRF LQKRKNRREA MSPYNH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.