Factsheet for PGSC0003DMT400022650

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000652
PGSC0003DMT400002963
PGSC0003DMT400007592
PGSC0003DMT400018046
PGSC0003DMT400045204
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	PGSC0003DMT400000652	AT1G01260.1	21798944
AT1G30135.1	PGSC0003DMT400018046	AT1G01260.1	21798944
AT1G30135.1	PGSC0003DMT400007592	AT1G19180.1	19309455
AT1G30135.1	PGSC0003DMT400075155	AT1G19180.1	19309455
AT1G30135.1	PGSC0003DMT400007592	AT1G19180.1	21798944
AT1G30135.1	PGSC0003DMT400075155	AT1G19180.1	21798944
AT1G30135.1	PGSC0003DMT400002963	AT1G32640.1	19309455
AT1G30135.1	PGSC0003DMT400045204	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g036640.2.1	Tomato	nucleus	89.57	91.96
PGSC0003DMT400002991	Potato	nucleus	72.17	78.3
PGSC0003DMT400022651	Potato	mitochondrion, nucleus	66.96	62.1
PGSC0003DMT400002985	Potato	cytosol	59.13	58.62
VIT_04s0008g00110.t01	Wine grape	cytosol	46.96	55.1
VIT_10s0003g03790.t01	Wine grape	cytosol	57.39	51.97
VIT_10s0003g03810.t01	Wine grape	nucleus	42.61	51.04
VIT_10s0003g03800.t01	Wine grape	cytosol	55.65	50.39
KRH58647	Soybean	cytosol	54.78	47.01
Bra021923.1-P	Field mustard	cytosol	47.83	47.01
CDY43664	Canola	nucleus	47.83	46.22
CDY17268	Canola	cytosol	45.22	44.83
Bra005407.1-P	Field mustard	cytosol	45.22	44.83
CDX84301	Canola	cytosol	45.22	44.83
KRH11175	Soybean	cytosol	51.3	44.36
KRH21078	Soybean	cytosol	53.04	44.2
KRH42552	Soybean	nucleus	57.39	44.0
CDY51470	Canola	nucleus	48.7	43.08
Bra022981.1-P	Field mustard	nucleus	41.74	42.48
CDX90230	Canola	nucleus	47.83	42.31
Bra010794.1-P	Field mustard	nucleus	47.83	42.31
AT1G30135.1	Thale cress	nucleus	47.83	41.98
CDX84639	Canola	nucleus	40.0	40.35
CDX99884	Canola	nucleus	46.09	40.15
Bra032362.1-P	Field mustard	nucleus	46.09	39.85
CDY26288	Canola	nucleus	45.22	39.1
CDX79568	Canola	nucleus	38.26	38.94
AT2G34600.1	Thale cress	nucleus	49.57	38.51
GSMUA_Achr9P10340_001	Banana	cytosol	41.74	37.8
GSMUA_Achr7P01220_001	Banana	extracellular	36.52	35.29
GSMUA_Achr6P31200_001	Banana	nucleus	41.74	32.21
GSMUA_Achr2P12970_001	Banana	cytosol	36.52	30.88
GSMUA_Achr4P31480_001	Banana	nucleus	38.26	29.14
GSMUA_Achr7P01230_001	Banana	nucleus	40.87	22.27
GSMUA_Achr3P23250_001	Banana	cytosol	28.7	18.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400022650	EnsemblPlantsGene:PGSC0003DMG400008781	EntrezGene:102603375	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PGSC:PGSC0003DMG400008781
RefSeq:XP_006346840.1	SMART:SM00979	UniParc:UPI000296272B	UniProt:M1AH02	MapMan:15.5.45	:

Description

Protein TIFY 5A [Source:PGSC_GENE;Acc:PGSC0003DMG400008781]

Coordinates

chr8:+:12079062..12079728

Molecular Weight (calculated)

13199.0 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.672

Length

115 amino acids

Sequence
(BLAST)

001: MRRNCNLELT LMPPSISDNF SSKNCTMEDQ QLENKQSQQL TIFYNGKFVV SDATELQAKA IIYLASRGME VKTNKMSDPS SPLLQPQTGL FMKRSLQGFL
101: QKRKRRVQAT SPYHH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.