CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97199
KRH06456
KRH39540
KRH45440
KRH47899
KRH68922
KRH74418
KRH75613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	KRG97199	AT1G01260.1	21798944
AT1G30135.1	KRH06456	AT1G01260.1	21798944
AT1G30135.1	KRH47899	AT1G01260.1	21798944
AT1G30135.1	KRH68922	AT1G01260.1	21798944
AT1G30135.1	KRH39540	AT1G32640.1	19309455
AT1G30135.1	KRH45440	AT1G32640.1	19309455
AT1G30135.1	KRH74418	AT1G32640.1	19309455
AT1G30135.1	KRH75613	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11175	Soybean	cytosol	82.61	85.71
KRH58647	Soybean	cytosol	61.59	63.43
VIT_04s0008g00110.t01	Wine grape	cytosol	43.48	61.22
KRH42552	Soybean	nucleus	64.49	59.33
VIT_10s0003g03790.t01	Wine grape	cytosol	52.9	57.48
VIT_10s0003g03810.t01	Wine grape	nucleus	39.13	56.25
VIT_10s0003g03800.t01	Wine grape	cytosol	50.72	55.12
PGSC0003DMT400002991	Potato	nucleus	41.3	53.77
Solyc08g036620.2.1	Tomato	nucleus	39.86	53.4
PGSC0003DMT400022650	Potato	cytosol	44.2	53.04
Solyc08g036640.2.1	Tomato	nucleus	42.03	51.79
PGSC0003DMT400002985	Potato	cytosol	42.75	50.86
PGSC0003DMT400022651	Potato	mitochondrion, nucleus	44.2	49.19
Solyc08g036660.2.1	Tomato	mitochondrion	43.48	47.24
Bra021923.1-P	Field mustard	cytosol	36.23	42.73
CDY43664	Canola	nucleus	36.23	42.02
GSMUA_Achr9P10340_001	Banana	cytosol	37.68	40.94
CDX84301	Canola	cytosol	34.06	40.52
Bra032362.1-P	Field mustard	nucleus	38.41	39.85
CDY17268	Canola	cytosol	33.33	39.66
Bra005407.1-P	Field mustard	cytosol	33.33	39.66
CDX90230	Canola	nucleus	36.96	39.23
Bra010794.1-P	Field mustard	nucleus	36.96	39.23
CDY26288	Canola	nucleus	37.68	39.1
Bra022981.1-P	Field mustard	nucleus	31.88	38.94
CDY51470	Canola	nucleus	36.23	38.46
AT1G30135.1	Thale cress	nucleus	36.23	38.17
CDX84639	Canola	nucleus	31.16	37.72
CDX99884	Canola	nucleus	35.51	37.12
CDX79568	Canola	nucleus	29.71	36.28
GSMUA_Achr6P31200_001	Banana	nucleus	37.68	34.9
GSMUA_Achr2P12970_001	Banana	cytosol	33.33	33.82
AT2G34600.1	Thale cress	nucleus	36.23	33.78
GSMUA_Achr7P01220_001	Banana	extracellular	28.26	32.77
GSMUA_Achr4P31480_001	Banana	nucleus	32.61	29.8
GSMUA_Achr7P01230_001	Banana	nucleus	39.86	26.07
GSMUA_Achr3P23250_001	Banana	cytosol	23.19	17.98

Protein Annotations

EntrezGene:100500349	MapMan:15.5.45	EMBL:ACUP02008337	EMBL:BT091270	UniProt:C6T1G4	InterPro:CCT_CS
EnsemblPlantsGene:GLYMA_13G219100	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347
GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EnsemblPlants:KRH21078	ProteinID:KRH21078	ProteinID:KRH21078.1
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	SMART:SM00979
InterPro:Tify_dom	UniParc:UPI0001B158A1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:33234249..33237470

Molecular Weight (calculated)

15909.9 Da

IEP (calculated)

9.243

GRAVY (calculated)

-0.809

Length

138 amino acids

Sequence
(BLAST)

001: MRRNCNLELA LFLPSDSGPR HHHSMVEEAS EISPIQNFFH HHHRQEQQQQ QPLTIFYDGN ICVADVTELQ AKSILLLANR KLEERVRTPT GSEPSSPAVM
101: QSNNQLYSPG TGLSMRKSLQ RFLQKRKNRV QEASPYHH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.