Factsheet for Solyc08g036620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096050.2.1
Solyc05g050560.1.1
Solyc07g042170.2.1
Solyc08g005050.2.1
Solyc08g076930.1.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	Solyc01g096050.2.1	AT1G01260.1	21798944
AT1G30135.1	Solyc05g050560.1.1	AT1G01260.1	21798944
AT1G30135.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT1G30135.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT1G30135.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT1G30135.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT1G30135.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G30135.1	Solyc08g076930.1.1	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002991	Potato	nucleus	87.38	84.91
Solyc08g036640.2.1	Tomato	nucleus	78.64	72.32
Solyc08g036660.2.1	Tomato	mitochondrion	75.73	61.42
VIT_04s0008g00110.t01	Wine grape	cytosol	46.6	48.98
VIT_10s0003g03810.t01	Wine grape	nucleus	44.66	47.92
VIT_10s0003g03790.t01	Wine grape	cytosol	56.31	45.67
VIT_10s0003g03800.t01	Wine grape	cytosol	54.37	44.09
Bra021923.1-P	Field mustard	cytosol	47.57	41.88
CDX84301	Canola	cytosol	46.6	41.38
KRH11175	Soybean	cytosol	53.4	41.35
CDY43664	Canola	nucleus	47.57	41.18
CDY51470	Canola	nucleus	51.46	40.77
Bra005407.1-P	Field mustard	cytosol	45.63	40.52
CDY17268	Canola	cytosol	45.63	40.52
KRH58647	Soybean	cytosol	52.43	40.3
CDX90230	Canola	nucleus	50.49	40.0
Bra010794.1-P	Field mustard	nucleus	50.49	40.0
KRH21078	Soybean	cytosol	53.4	39.86
AT1G30135.1	Thale cress	nucleus	50.49	39.69
CDX99884	Canola	nucleus	48.54	37.88
KRH42552	Soybean	nucleus	54.37	37.33
Bra032362.1-P	Field mustard	nucleus	47.57	36.84
Bra022981.1-P	Field mustard	nucleus	39.81	36.28
CDY26288	Canola	nucleus	46.6	36.09
CDX84639	Canola	nucleus	39.81	35.96
AT2G34600.1	Thale cress	nucleus	49.51	34.46
CDX79568	Canola	nucleus	36.89	33.63
GSMUA_Achr7P01220_001	Banana	extracellular	37.86	32.77
GSMUA_Achr9P10340_001	Banana	cytosol	39.81	32.28
GSMUA_Achr6P31200_001	Banana	nucleus	40.78	28.19
GSMUA_Achr2P12970_001	Banana	cytosol	36.89	27.94
GSMUA_Achr4P31480_001	Banana	nucleus	40.78	27.81
GSMUA_Achr7P01230_001	Banana	nucleus	42.72	20.85
GSMUA_Achr3P23250_001	Banana	cytosol	30.1	17.42

Protein Annotations

MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4CK22	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	SMART:SM00979	EnsemblPlantsGene:Solyc08g036620.2
EnsemblPlants:Solyc08g036620.2.1	InterPro:Tify_dom	UniParc:UPI000276C078	:	:	:

Description

No Description!

Coordinates

chr8:+:10645906..10646497

Molecular Weight (calculated)

12098.7 Da

IEP (calculated)

10.569

GRAVY (calculated)

-0.777

Length

103 amino acids

Sequence
(BLAST)

001: MRRKCNLELT LSPSNLLMED KRLENEQSQQ LTIFYNGKFV ASHVTQLQAK AIIYLASREM EEKTNKLSEP SSPLLQPQTV KKSLQRFLQK RKNRIQITSP
101: YHH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.