Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g042170.2.1 | |
| Solyc12g009220.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01260.1 | Solyc07g042170.2.1 | AT1G19180.1 | 21798944 |
| AT1G01260.1 | Solyc12g009220.1.1 | AT1G19180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 94.47 | 94.64 |
| Solyc01g096050.2.1 | Tomato | nucleus | 72.19 | 69.09 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 66.49 | 63.74 |
| KRH68922 | Soybean | nucleus | 53.2 | 56.0 |
| KRH06456 | Soybean | nucleus | 57.51 | 53.88 |
| KRG97199 | Soybean | nucleus | 57.17 | 53.47 |
| GSMUA_Achr10P... | Banana | nucleus | 42.14 | 53.16 |
| KRH47899 | Soybean | nucleus | 57.17 | 52.88 |
| AT1G01260.1 | Thale cress | nucleus | 53.02 | 52.03 |
| CDY27319 | Canola | nucleus | 39.55 | 51.69 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 39.55 | 50.78 |
| CDY66312 | Canola | nucleus | 40.07 | 50.66 |
| Bra039279.1-P | Field mustard | nucleus | 40.07 | 50.54 |
| CDX90021 | Canola | nucleus | 46.8 | 50.19 |
| Bra033273.1-P | Field mustard | nucleus | 49.4 | 48.97 |
| CDX80023 | Canola | nucleus | 40.59 | 48.25 |
| Bra004532.1-P | Field mustard | nucleus | 40.24 | 47.94 |
| CDY56874 | Canola | nucleus | 40.59 | 47.86 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 38.0 | 47.52 |
| AT2G46510.1 | Thale cress | nucleus | 45.08 | 46.11 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 37.65 | 45.89 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 38.51 | 44.87 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 36.79 | 44.01 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 35.75 | 42.16 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 41.28 | 41.57 |
| Zm00001d039271_P001 | Maize | nucleus | 43.52 | 40.91 |
| Zm00001d009013_P001 | Maize | nucleus | 43.01 | 40.75 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 41.8 | 40.54 |
| EER99993 | Sorghum | nucleus | 43.52 | 40.51 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 41.62 | 40.3 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 41.45 | 40.13 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 42.49 | 39.94 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 42.66 | 39.52 |
| Os01t0235700-01 | Rice | nucleus | 41.97 | 39.38 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 42.49 | 39.36 |
| Solyc06g083980.1.1 | Tomato | nucleus | 32.3 | 39.2 |
| EES19274 | Sorghum | nucleus | 38.17 | 37.65 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 43.01 | 32.46 |
| Solyc10g009270.2.1 | Tomato | nucleus | 20.21 | 29.77 |
| Zm00001d007536_P001 | Maize | plastid | 31.09 | 29.65 |
| Solyc10g009290.1.1 | Tomato | nucleus | 22.45 | 28.82 |
| Solyc01g096370.2.1 | Tomato | nucleus | 21.93 | 28.22 |
| Solyc08g005050.2.1 | Tomato | nucleus | 22.45 | 28.02 |
| Solyc08g083170.1.1 | Tomato | extracellular | 18.31 | 27.39 |
| Solyc08g008600.2.1 | Tomato | nucleus | 20.03 | 25.66 |
| Solyc08g076930.1.1 | Tomato | nucleus | 30.05 | 25.25 |
| Solyc01g106460.2.1 | Tomato | nucleus | 8.64 | 20.58 |
| Solyc08g081140.2.1 | Tomato | nucleus | 19.34 | 17.89 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 6.74 | 16.67 |
| Solyc09g065100.1.1 | Tomato | nucleus | 19.17 | 16.32 |
| Solyc02g091820.1.1 | Tomato | nucleus | 8.46 | 15.03 |
| Solyc06g064590.1.1 | Tomato | nucleus | 7.25 | 14.95 |
| Solyc02g091810.1.1 | Tomato | nucleus | 7.6 | 13.84 |
| Solyc02g091800.2.1 | Tomato | nucleus | 7.94 | 13.26 |
| Solyc06g064580.1.1 | Tomato | nucleus | 6.91 | 13.16 |
Protein Annotations
| EnsemblPlants:Solyc05g050560.1.1 | EnsemblPlantsGene:Solyc05g050560.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | InterPro:bHLH_dom |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000276721E | UniProt:K4C188 | MapMan:15.5.32 | : |
Description
No Description!
Coordinates
chr5:+:60710830..60712569
Molecular Weight (calculated)
64274.6 Da
IEP (calculated)
7.784
GRAVY (calculated)
-0.425
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMLWSDEDK TMVAAVLGTK AFDYLMSSLV SAECSLMAMG SDENLQNMLS DLVERPNASN FSWNYAIFWQ ISRSKLGELV LGWGDGCCRE AREGEESELT
101: RILNIRLADE AQQRMRKRVL QKLHMFFGGT DEDNYVSGLD KVTDTEMFFL ASMYFSFPRG QGGPGKCFTA GKHVWLSDVM RSSVDYCSRS FLMKSAGMQT
201: VVLIPTDIGV MELGSVRTIP ESLELVHSIK SCFSSFLAQV RAKQAAPLAA VVAEKKNGNN SVFPSSFPFD QSKENPKIFG QNLESGSTEF REKLALRKPV
301: DGPLEMYRNG NRAPIINTQN GVRPVSWASF GNVKPGNSVD LYSPQAPPNN LREFVNGGRE ELRLNSLQHQ KPGGMQIDFT NSRPVVSPVP TVESEHSDVE
401: VSCKEKHAGP ADERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA IAHITDMQKR IRDAEYKLEK RGSTSVDAAD
501: INIEAASDEV IVRARCPLGT HPVAKVVEAF KETQVSVVES KLAVGNDTVY HTFVVKSSGP EQLTKEKLMA AFAGESNSL
101: RILNIRLADE AQQRMRKRVL QKLHMFFGGT DEDNYVSGLD KVTDTEMFFL ASMYFSFPRG QGGPGKCFTA GKHVWLSDVM RSSVDYCSRS FLMKSAGMQT
201: VVLIPTDIGV MELGSVRTIP ESLELVHSIK SCFSSFLAQV RAKQAAPLAA VVAEKKNGNN SVFPSSFPFD QSKENPKIFG QNLESGSTEF REKLALRKPV
301: DGPLEMYRNG NRAPIINTQN GVRPVSWASF GNVKPGNSVD LYSPQAPPNN LREFVNGGRE ELRLNSLQHQ KPGGMQIDFT NSRPVVSPVP TVESEHSDVE
401: VSCKEKHAGP ADERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA IAHITDMQKR IRDAEYKLEK RGSTSVDAAD
501: INIEAASDEV IVRARCPLGT HPVAKVVEAF KETQVSVVES KLAVGNDTVY HTFVVKSSGP EQLTKEKLMA AFAGESNSL
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.