Factsheet for Solyc07g042170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096050.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g118540.2.1
Solyc05g050560.1.1
Solyc05g052620.2.1
Solyc06g068930.1.1
Solyc06g072990.1.1
Solyc07g042170.2.1
Solyc08g005050.2.1
Solyc08g036620.2.1
Solyc08g036640.2.1
Solyc08g036660.2.1
Solyc08g076930.1.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19180.1	Solyc01g096050.2.1	AT1G01260.1	21798944
AT1G19180.1	Solyc05g050560.1.1	AT1G01260.1	21798944
AT1G19180.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT1G19180.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT1G19180.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT1G19180.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT1G19180.1	Solyc08g036620.2.1	AT1G30135.1	19309455
AT1G19180.1	Solyc08g036640.2.1	AT1G30135.1	19309455
AT1G19180.1	Solyc08g036660.2.1	AT1G30135.1	19309455
AT1G19180.1	Solyc08g005050.2.1	AT1G32640.1	18547396
AT1G19180.1	Solyc08g076930.1.1	AT1G32640.1	18547396
AT1G19180.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G19180.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G19180.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT1G19180.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT1G19180.1	Solyc05g052620.2.1	AT2G39940.1	17637677
AT1G19180.1	Solyc05g052620.2.1	AT2G39940.1	18547396
AT1G19180.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G19180.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT1G19180.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT1G19180.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT1G19180.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT1G19180.1	Solyc06g072990.1.1	AT5G24660.1	21798944
AT1G74950.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G74950.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G74950.1	Solyc05g052620.2.1	AT2G39940.1	18547396
AT1G74950.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G74950.1	Solyc06g068930.1.1	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075155	Potato	nucleus	91.67	92.09
Solyc12g009220.1.1	Tomato	nucleus	49.07	42.06
AT1G19180.1	Thale cress	cytosol	43.98	37.55
CDY37269	Canola	nucleus	39.35	35.42
CDY26697	Canola	plastid	41.2	35.18
CDY46022	Canola	nucleus	38.89	35.0
Bra008172.1-P	Field mustard	nucleus	38.43	34.58
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	42.59	34.33
CDY41023	Canola	plastid	39.81	33.86
Bra025713.1-P	Field mustard	plastid	39.81	33.86
TraesCS2B01G195600.1	Wheat	plastid	36.11	33.77
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	37.04	33.47
TraesCS2D01G176800.1	Wheat	plastid	35.65	33.33
GSMUA_Achr2P21770_001	Banana	mitochondrion	33.8	33.03
GSMUA_Achr3P05920_001	Banana	nucleus	37.96	32.67
GSMUA_Achr9P14370_001	Banana	cytosol	39.81	32.45
Bra016520.1-P	Field mustard	plastid	38.89	32.43
TraesCS2A01G169300.1	Wheat	plastid	34.26	32.03
Os07t0615200-01	Rice	mitochondrion	36.11	31.97
AT1G74950.1	Thale cress	cytosol	36.57	31.73
Bra031065.1-P	Field mustard	plastid	39.81	31.5
GSMUA_Achr6P31050_001	Banana	cytosol	31.02	31.46
EER98969	Sorghum	cytosol	31.94	31.22
CDX96675	Canola	plastid	37.96	31.18
GSMUA_Achr3P10270_001	Banana	cytosol	32.41	30.97
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	34.26	30.71
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	32.41	30.7
Os03t0402800-01	Rice	plastid	32.41	30.7
EER92157	Sorghum	plastid	32.41	30.7
CDX83781	Canola	plastid	37.5	30.68
EER97533	Sorghum	plastid	33.33	30.64
CDX73127	Canola	cytosol	34.72	30.61
CDX85865	Canola	cytosol	31.48	30.36
Solyc01g103600.2.1	Tomato	nucleus	18.06	30.23
Zm00001d022139_P001	Maize	plastid	32.41	30.04
CDY45408	Canola	cytosol	33.8	29.8
Bra015880.1-P	Field mustard	cytosol	33.8	29.8
GSMUA_Achr10P...	Banana	cytosol	22.22	29.63
GSMUA_AchrUn_...	Banana	nucleus	33.8	29.55
GSMUA_Achr5P22110_001	Banana	mitochondrion	33.8	29.55
Zm00001d020614_P001	Maize	cytosol, plastid	29.63	29.36
GSMUA_Achr7P19850_001	Banana	cytosol	32.41	28.93
CDX68156	Canola	cytosol	24.07	28.73
GSMUA_Achr3P02140_001	Banana	mitochondrion	27.78	28.71
TraesCS5D01G219300.2	Wheat	nucleus	30.56	28.7
Zm00001d005813_P002	Maize	cytosol, plastid	30.09	28.63
Bra003778.1-P	Field mustard	cytosol	29.17	28.38
TraesCS5B01G211000.1	Wheat	nucleus	30.09	28.26
Os09t0439200-01	Rice	plastid	30.09	28.02
GSMUA_Achr11P...	Banana	cytosol	29.63	27.59
CDX73289	Canola	cytosol	23.61	27.13
Zm00001d006860_P001	Maize	plastid	33.33	27.07
Solyc12g049400.1.1	Tomato	cytosol	25.0	27.0
GSMUA_Achr8P16780_001	Banana	cytosol	29.63	25.3
Solyc03g122190.2.1	Tomato	nucleus	33.8	23.62
TraesCS5A01G212800.1	Wheat	plastid	30.56	22.3
GSMUA_Achr1P21870_001	Banana	mitochondrion	36.11	22.1
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	29.17	21.36
CDX81917	Canola	plastid	39.81	16.93
CDY21679	Canola	plastid	39.35	15.6

Protein Annotations

MapMan:11.7.2.1.2	MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719
GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4CE80
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF19	SMART:SM00979
EnsemblPlantsGene:Solyc07g042170.2	EnsemblPlants:Solyc07g042170.2.1	InterPro:Tify_dom	UniParc:UPI000276BE03	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:55184686..55185886

Molecular Weight (calculated)

23850.6 Da

IEP (calculated)

8.970

GRAVY (calculated)

-0.523

Length

216 amino acids

Sequence
(BLAST)

001: MASSEIVDSG RFAGQKSHFS HTCNLLSQYL KEKKGSLGDL SLDMHRNFDS AGSTTMDLLP MIEKSGELVQ KSMNLFPQGG MKAESEPEKA QMTIFYGGQV
101: IVFNDFPADK AKEIMLMAST SKGNNPAKPL ESAADLVVPS FGKTSIQENQ MPNQPIVSDL PIARRASLTR FLEKRKDRLT AKVPYHREEA AAPKKEEHKA
201: PWLGLGGQFA VKTEQY

Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.