Factsheet for Solyc12g049400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118540.2.1
Solyc06g068930.1.1
Solyc08g005050.2.1
Solyc08g076930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17380.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G17380.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G17380.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G17380.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT1G72450.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G72450.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G72450.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G72450.1	Solyc06g068930.1.1	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011155	Potato	nucleus	67.5	67.5
Solyc01g103600.2.1	Tomato	nucleus	17.5	27.13
Solyc07g042170.2.1	Tomato	cytosol	27.0	25.0
Solyc12g009220.1.1	Tomato	nucleus	30.5	24.21
KRH47640	Soybean	nucleus	28.0	24.14
KRH06217	Soybean	nucleus, plastid	27.5	23.91
Solyc03g122190.2.1	Tomato	nucleus	34.5	22.33
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	30.5	21.33
Bra016604.1-P	Field mustard	nucleus	24.5	18.15
CDX96772	Canola	nucleus	24.0	17.98
Bra016056.1-P	Field mustard	nucleus	24.0	17.52
CDX96409	Canola	nucleus	24.0	17.52
AT1G72450.1	Thale cress	nucleus	23.5	17.47
CDY71875	Canola	cytosol	19.5	17.33
CDY71173	Canola	nucleus	23.0	16.91
Bra025977.1-P	Field mustard	nucleus	21.5	16.8
CDY03638	Canola	nucleus	22.5	16.48
Bra008033.1-P	Field mustard	nucleus	22.5	16.48
Bra030986.1-P	Field mustard	nucleus	24.5	16.39
AT1G17380.1	Thale cress	nucleus	22.0	16.06
CDX72916	Canola	nucleus	21.5	15.87
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	22.5	15.52
CDY26248	Canola	mitochondrion, nucleus	20.5	15.47
CDX81823	Canola	plastid	22.5	13.55

Protein Annotations

MapMan:11.7.2.1.2	MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719
GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4DFM0
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	SMART:SM00979
EnsemblPlantsGene:Solyc12g049400.1	EnsemblPlants:Solyc12g049400.1.1	InterPro:Tify_dom	UniParc:UPI00027699F2	:	:

Description

No Description!

Coordinates

chr12:-:36917616..36920912

Molecular Weight (calculated)

22360.4 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.651

Length

200 amino acids

Sequence
(BLAST)

001: MSNRQLCSLD SEKSHLMNTC NLLTQFFNGK ANINDLNLTI SNNGEAKASA TKDLLTNMEE LSTKTTEQDQ KLIDHVPKSA INKASGSKEI PHKEQKLAQL
101: SIFYGGKVVV FDDFPAEKAR AVMLLASKGI SNNSCAIFQT PTTTQTNGSN NFDLPIARRS SLYRFLEKRK DRDTARAPYQ MHNPLQSSSR TRGDHFDLNF

Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.