Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72450.1 | CDX73261 | AT1G32640.1 | 19309455 |
| AT1G72450.1 | CDX84081 | AT1G32640.1 | 19309455 |
| AT1G72450.1 | CDY26910 | AT1G32640.1 | 19309455 |
| AT1G72450.1 | CDX92171 | AT3G17860.1 | 19309455 |
| AT1G72450.1 | CDX95810 | AT3G17860.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03638 | Canola | nucleus | 87.87 | 87.55 |
| Bra008033.1-P | Field mustard | nucleus | 66.18 | 65.93 |
| CDX72916 | Canola | nucleus | 56.25 | 56.46 |
| CDX96409 | Canola | nucleus | 55.88 | 55.47 |
| AT1G72450.1 | Thale cress | nucleus | 49.63 | 50.19 |
| CDY26248 | Canola | mitochondrion, nucleus | 38.24 | 39.25 |
| CDY71875 | Canola | cytosol | 30.51 | 36.89 |
| CDX96772 | Canola | nucleus | 35.66 | 36.33 |
| CDX81823 | Canola | plastid | 40.81 | 33.43 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 35.29 | 33.1 |
| CDX85865 | Canola | cytosol | 25.0 | 30.36 |
| KRH47640 | Soybean | nucleus | 23.9 | 28.02 |
| CDY41023 | Canola | plastid | 25.0 | 26.77 |
| CDY26697 | Canola | plastid | 24.63 | 26.48 |
| CDY46022 | Canola | nucleus | 22.79 | 25.83 |
| CDY37269 | Canola | nucleus | 22.43 | 25.42 |
| CDY45408 | Canola | cytosol | 22.79 | 25.31 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 18.38 | 25.13 |
| CDX83781 | Canola | plastid | 24.26 | 25.0 |
| PGSC0003DMT400011155 | Potato | nucleus | 18.38 | 25.0 |
| CDX73127 | Canola | cytosol | 22.43 | 24.9 |
| CDX68156 | Canola | cytosol | 16.54 | 24.86 |
| KRH06217 | Soybean | nucleus, plastid | 20.96 | 24.78 |
| CDX96675 | Canola | plastid | 23.9 | 24.71 |
| CDX92427 | Canola | cytosol | 18.01 | 24.38 |
| CDX73289 | Canola | cytosol | 16.54 | 23.94 |
| Solyc12g049400.1.1 | Tomato | cytosol | 16.91 | 23.0 |
| CDY09086 | Canola | cytosol | 17.65 | 21.72 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 22.43 | 21.33 |
| Solyc03g122190.2.1 | Tomato | nucleus | 22.79 | 20.06 |
| PGSC0003DMT400058918 | Potato | nucleus | 22.43 | 19.74 |
| CDX81917 | Canola | plastid | 22.06 | 11.81 |
| CDY21679 | Canola | plastid | 23.16 | 11.56 |
Protein Annotations
| EnsemblPlants:CDY71173 | EnsemblPlantsGene:GSBRNA2T00011919001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDY71173 | ProteinID:CDY71173.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EE01BD | UniProt:A0A078JUE3 | MapMan:15.5.45 | : |
Description
BnaC02g45660DBnaC02g45660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUE3]
Coordinates
chrLK044776:+:979..2547
Molecular Weight (calculated)
29951.0 Da
IEP (calculated)
7.705
GRAVY (calculated)
-0.850
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNGKAPEKS SFSLRCSLFS RYLKEKGSFG NIDIGLARKL DLELAGKSDL SGQQNEIKKA DISETRPFDL SQKVSVGEVS TSSGGNPRFV DLSEPASVVP
101: EPGNSQLTIF FRGKVMVYDE FPEDKAKEIM EAAREAAHHV STDSKNTQNL DMNVNNKSNV VIPDLNEPST SGTNNDDHQT GQQHQVVERI ARRASLHRFF
201: AKRKDRAVAR APYQVNQSGG HLPPKPQKVG PSVEPGQPSR QPETPSKPKR HNDVSMEVDG EGRCSEDLEL KL
101: EPGNSQLTIF FRGKVMVYDE FPEDKAKEIM EAAREAAHHV STDSKNTQNL DMNVNNKSNV VIPDLNEPST SGTNNDDHQT GQQHQVVERI ARRASLHRFF
201: AKRKDRAVAR APYQVNQSGG HLPPKPQKVG PSVEPGQPSR QPETPSKPKR HNDVSMEVDG EGRCSEDLEL KL
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
Arabidopsis Description
TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.