CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX84081
CDX92171
CDX95810
CDY26910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72450.1	CDX73261	AT1G32640.1	19309455
AT1G72450.1	CDX84081	AT1G32640.1	19309455
AT1G72450.1	CDY26910	AT1G32640.1	19309455
AT1G72450.1	CDX92171	AT3G17860.1	19309455
AT1G72450.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96409	Canola	nucleus	70.48	69.71
CDY71173	Canola	nucleus	56.46	56.25
CDY03638	Canola	nucleus	54.98	54.58
AT1G72450.1	Thale cress	nucleus	48.34	48.7
CDY26248	Canola	mitochondrion, nucleus	43.17	44.15
CDY71875	Canola	cytosol	34.32	41.33
CDX96772	Canola	nucleus	36.53	37.08
CDX81823	Canola	plastid	45.39	37.05
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	36.53	34.14
CDX85865	Canola	cytosol	20.66	25.0
CDY26697	Canola	plastid	23.25	24.9
KRH47640	Soybean	nucleus	20.66	24.14
CDY41023	Canola	plastid	22.51	24.02
CDY46022	Canola	nucleus	20.66	23.33
CDX83781	Canola	plastid	22.51	23.11
CDY37269	Canola	nucleus	20.3	22.92
CDY45408	Canola	cytosol	20.66	22.86
KRH06217	Soybean	nucleus, plastid	19.19	22.61
PGSC0003DMT400011155	Potato	nucleus	16.61	22.5
CDX73127	Canola	cytosol	20.3	22.45
CDX68156	Canola	cytosol	14.76	22.1
CDX96675	Canola	plastid	21.03	21.67
Solyc12g049400.1.1	Tomato	cytosol	15.87	21.5
CDX73289	Canola	cytosol	14.76	21.28
CDY16574	Canola	cytoskeleton, cytosol, nucleus	15.13	20.6
CDY09086	Canola	cytosol	16.61	20.36
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	20.66	19.58
CDX92427	Canola	cytosol	14.39	19.4
PGSC0003DMT400058918	Potato	nucleus	21.77	19.09
Solyc03g122190.2.1	Tomato	nucleus	21.77	19.09
CDX81917	Canola	plastid	21.77	11.61
CDY21679	Canola	plastid	22.88	11.38

Protein Annotations

EnsemblPlants:CDX72916	EnsemblPlantsGene:GSBRNA2T00103337001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDX72916	ProteinID:CDX72916.1
SEG:seg	SMART:SM00979	UniParc:UPI0004EBB0D4	MapMan:15.5.45	:	:

Description

BnaC06g33640D

Coordinates

chrLK031797:-:1121412..1123511

Molecular Weight (calculated)

30324.7 Da

IEP (calculated)

10.115

GRAVY (calculated)

-0.968

Length

271 amino acids

Sequence
(BLAST)

001: MSTGQAPEKS NFNRRRSLLS RYLKEKGSFG DIDIGLARKS DPQLAGNNNH RAQQNAIKKA NISESRPFKL TQKQLSVGET STSSRGKAID VVYLSEPRNV
101: PEPKNSQLTI FFGSKVIVYN EFPEDKAKEI IEAAKEANPV VVDSKKTQNL DMNINNERNV VIPDLNEPTS SGNNDDRQTK EEHQVVERIA RRASLHRFFA
201: KRKDRAVARA PYQVNQNGGH LPPKPQMVGP SVEAGQPSQQ PATPSKPQRH NDMSMEVDEE GRCSKDLELK L

Best Arabidopsis Sequence Match ( AT1G72450.1 )
(BLAST)

001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL

Arabidopsis Description

TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.