Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17380.1 | CDX73261 | AT1G32640.1 | 19309455 |
| AT1G17380.1 | CDX84081 | AT1G32640.1 | 19309455 |
| AT1G17380.1 | CDY26910 | AT1G32640.1 | 19309455 |
| AT1G17380.1 | CDX92171 | AT3G17860.1 | 19309455 |
| AT1G17380.1 | CDX95810 | AT3G17860.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96772 | Canola | nucleus | 55.11 | 46.44 |
| CDY26248 | Canola | mitochondrion, nucleus | 47.56 | 40.38 |
| AT1G17380.1 | Thale cress | nucleus | 48.44 | 39.78 |
| CDX72916 | Canola | nucleus | 41.33 | 34.32 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 41.78 | 32.41 |
| CDX81823 | Canola | plastid | 45.33 | 30.72 |
| CDX96409 | Canola | nucleus | 37.33 | 30.66 |
| CDY71173 | Canola | nucleus | 36.89 | 30.51 |
| CDY03638 | Canola | nucleus | 36.44 | 30.04 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 19.56 | 22.11 |
| CDX73289 | Canola | cytosol | 17.78 | 21.28 |
| CDX92427 | Canola | cytosol | 18.67 | 20.9 |
| CDX68156 | Canola | cytosol | 16.44 | 20.44 |
| CDX73127 | Canola | cytosol | 22.22 | 20.41 |
| CDY46022 | Canola | nucleus | 21.33 | 20.0 |
| CDY09086 | Canola | cytosol | 19.56 | 19.91 |
| CDY45408 | Canola | cytosol | 21.33 | 19.59 |
| CDY37269 | Canola | nucleus | 20.89 | 19.58 |
| Solyc12g049400.1.1 | Tomato | cytosol | 17.33 | 19.5 |
| CDY26697 | Canola | plastid | 21.78 | 19.37 |
| CDY41023 | Canola | plastid | 21.78 | 19.29 |
| PGSC0003DMT400011155 | Potato | nucleus | 16.89 | 19.0 |
| CDX96675 | Canola | plastid | 21.78 | 18.63 |
| CDX83781 | Canola | plastid | 21.78 | 18.56 |
| KRH47640 | Soybean | nucleus | 19.11 | 18.53 |
| CDX85865 | Canola | cytosol | 17.78 | 17.86 |
| KRH06217 | Soybean | nucleus, plastid | 17.78 | 17.39 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 21.33 | 16.78 |
| PGSC0003DMT400058918 | Potato | nucleus | 20.89 | 15.21 |
| Solyc03g122190.2.1 | Tomato | nucleus | 20.89 | 15.21 |
| CDX81917 | Canola | plastid | 23.11 | 10.24 |
| CDY21679 | Canola | plastid | 22.67 | 9.36 |
Protein Annotations
| EnsemblPlants:CDY71875 | EnsemblPlantsGene:GSBRNA2T00020988001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDY71875 | ProteinID:CDY71875.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EDC755 | UniProt:A0A078JZT4 | MapMan:15.5.45 | : |
Description
BnaC08g48340DBnaC08g48340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZT4]
Coordinates
chrLK047915:-:1252..2189
Molecular Weight (calculated)
25248.0 Da
IEP (calculated)
9.034
GRAVY (calculated)
-0.795
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPIKLTRVF YSLYSEKQNV MHKANSELKA LNVLGEPSIS SGGKAKPTNL SEPSEPVSSQ LTIFFGGKVL VYNEFPSDKA KEIIQVAKEA KSVTDINIQT
101: QINVQKDHNK SNMVLPDLNE PTDTADVNQQ QQQQNQLVER IARRASLHRF FAKRKDRAVA RAPYQVNQTG GGHHYPPKPE TVPGQQLEQG QSSQRPAQPK
201: PECDKDMLME IKEDGQCSKD LELRL
101: QINVQKDHNK SNMVLPDLNE PTDTADVNQQ QQQQNQLVER IARRASLHRF FAKRKDRAVA RAPYQVNQTG GGHHYPPKPE TVPGQQLEQG QSSQRPAQPK
201: PECDKDMLME IKEDGQCSKD LELRL
001: MWLIKFQRYK MLYHFSKVII VHESFYSLYA GKQNAMHKAG HSKGEPSTSS GGKVKDVADL SESQPGSSQL TIFFGGKVLV YNEFPVDKAK EIMEVAKQAK
101: PVTEINIQTP INDENNNNKS SMVLPDLNEP TDNNHLTKEQ QQQQEQNQIV ERIARRASLH RFFAKRKDRA VARAPYQVNQ NAGHHRYPPK PEIVTGQPLE
201: AGQSSQRPPD NAIGQTMAHI KSDGDKDDIM KIEEGQSSKD LDLRL
101: PVTEINIQTP INDENNNNKS SMVLPDLNEP TDNNHLTKEQ QQQQEQNQIV ERIARRASLH RFFAKRKDRA VARAPYQVNQ NAGHHRYPPK PEIVTGQPLE
201: AGQSSQRPPD NAIGQTMAHI KSDGDKDDIM KIEEGQSSKD LDLRL
Arabidopsis Description
TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [mitochondrion,extracellular]
SUBAcon: [mitochondrion,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.