Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g049400.1.1 | Tomato | cytosol | 67.5 | 67.5 |
| PGSC0003DMT400075155 | Potato | nucleus | 31.0 | 28.84 |
| PGSC0003DMT400064125 | Potato | cytosol | 13.0 | 27.96 |
| PGSC0003DMT400007592 | Potato | nucleus | 32.5 | 25.59 |
| PGSC0003DMT400058918 | Potato | nucleus | 38.5 | 24.92 |
| KRH06217 | Soybean | nucleus, plastid | 28.5 | 24.78 |
| KRH47640 | Soybean | nucleus | 27.5 | 23.71 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 33.5 | 23.43 |
| Bra016604.1-P | Field mustard | nucleus | 26.5 | 19.63 |
| CDX96772 | Canola | nucleus | 26.0 | 19.48 |
| Bra008033.1-P | Field mustard | nucleus | 26.5 | 19.41 |
| CDY03638 | Canola | nucleus | 25.5 | 18.68 |
| CDY71173 | Canola | nucleus | 25.0 | 18.38 |
| Bra030986.1-P | Field mustard | nucleus | 27.0 | 18.06 |
| AT1G72450.1 | Thale cress | nucleus | 24.0 | 17.84 |
| Bra025977.1-P | Field mustard | nucleus | 22.5 | 17.58 |
| CDY26248 | Canola | mitochondrion, nucleus | 23.0 | 17.36 |
| CDX96409 | Canola | nucleus | 23.5 | 17.15 |
| Bra016056.1-P | Field mustard | nucleus | 23.5 | 17.15 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 24.5 | 16.9 |
| CDY71875 | Canola | cytosol | 19.0 | 16.89 |
| AT1G17380.1 | Thale cress | nucleus | 23.0 | 16.79 |
| CDX72916 | Canola | nucleus | 22.5 | 16.61 |
| CDX81823 | Canola | plastid | 24.0 | 14.46 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011155 | EnsemblPlantsGene:PGSC0003DMG400004367 | EntrezGene:102584798 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | PGSC:PGSC0003DMG400004367 |
| RefSeq:XP_006361332.1 | SEG:seg | SMART:SM00979 | UniParc:UPI000296F0F1 | UniProt:M0ZZ46 | MapMan:15.5.45 |
Description
Salt responsive protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400004367]
Coordinates
chr12:+:52809044..52815188
Molecular Weight (calculated)
22398.4 Da
IEP (calculated)
9.828
GRAVY (calculated)
-0.711
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNRPLSSLD SEKSHLMKTC NLLTQYFNGK ADLKNLNLTI SNNGEAKASA TKDLLTNMEE SSTKTTEQDQ KLIDHVPKSA INKASSSKEI PNKEQKLAQL
101: SIFYGGKVVV FDDFPAEKAR AVMLLASKGI SNNSCAIFQT TTTTQTNGAN NFDLPIARRS SLYRFLEKRK DRDTARAPYQ MHNPLQSSSR TREDHFDLNF
101: SIFYGGKVVV FDDFPAEKAR AVMLLASKGI SNNSCAIFQT TTTTQTNGAN NFDLPIARRS SLYRFLEKRK DRDTARAPYQ MHNPLQSSSR TREDHFDLNF
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
Arabidopsis Description
TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.