Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g103600.2.1 | Tomato | nucleus | 37.63 | 27.13 |
| PGSC0003DMT400011155 | Potato | nucleus | 27.96 | 13.0 |
| VIT_12s0035g00900.t01 | Wine grape | nucleus | 25.81 | 11.59 |
| PGSC0003DMT400075155 | Potato | nucleus | 24.73 | 10.7 |
| PGSC0003DMT400007592 | Potato | nucleus | 27.96 | 10.24 |
| PGSC0003DMT400058918 | Potato | nucleus | 27.96 | 8.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400064125 | EnsemblPlantsGene:PGSC0003DMG400024918 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF13 |
| PFAM:PF06200 | PFscan:PS51320 | PGSC:PGSC0003DMG400024918 | SMART:SM00979 | UniParc:UPI00029626CA | UniProt:M1CBS7 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024918]
Coordinates
chr1:-:80290149..80296308
Molecular Weight (calculated)
10606.7 Da
IEP (calculated)
7.506
GRAVY (calculated)
-0.328
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNLELAILP QLQHDDTKVP VLPREKSESQ QLTIFYAGIV HVYDNIPVQK AESIMNLARE NCSQLISGST YNAKEIKPTQ KSQVYKFQAA FYF
001: MDVGVSPAKS ILAKPLKLLT EEDISQLTRE DCRKFLKDKG MRRPSWNKSQ AIQQVLSLKA LYEPGDDSGA GIFRKILVSQ PVNPPRVTTT LIEPSNELEA
101: CGRVSYPEDN GACHRMDSPR SAEFSGGSGH FVSEKDGHKT TISPRSPAET SELVGQMTIF YSGKVNVYDG IPPEKARSIM HFAANPIDLP ENGIFASSRM
201: ISKLISKGKL LLKCLICFSV DR
101: CGRVSYPEDN GACHRMDSPR SAEFSGGSGH FVSEKDGHKT TISPRSPAET SELVGQMTIF YSGKVNVYDG IPPEKARSIM HFAANPIDLP ENGIFASSRM
201: ISKLISKGKL LLKCLICFSV DR
Arabidopsis Description
TIFY4AProtein TIFY 4A [Source:UniProtKB/Swiss-Prot;Acc:Q7XA73]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.