Factsheet for Solyc01g103600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064125	Potato	cytosol	27.13	37.63
Solyc07g042170.2.1	Tomato	cytosol	30.23	18.06
Solyc12g049400.1.1	Tomato	cytosol	27.13	17.5
VIT_12s0035g00900.t01	Wine grape	nucleus	27.91	17.39
Solyc12g009220.1.1	Tomato	nucleus	28.68	14.68
Solyc03g122190.2.1	Tomato	nucleus	31.78	13.27

Protein Annotations

MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4B1T5	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF10	SMART:SM00979	EnsemblPlantsGene:Solyc01g103600.2
EnsemblPlants:Solyc01g103600.2.1	InterPro:Tify_dom	UniParc:UPI0002768409	:	:	:

Description

No Description!

Coordinates

chr1:-:92176977..92179270

Molecular Weight (calculated)

15047.7 Da

IEP (calculated)

9.123

GRAVY (calculated)

-0.999

Length

129 amino acids

Sequence
(BLAST)

001: MRIPRHDDTK DPVSQRVTSE SEQLTIFYAG IVHVYDNISV QKAESIMNLA SENCNAKEIK PTQKSQVPHH VYKFQAELPI ARRKSLKRFF EKRHSRITSK
101: QPYASPECDH DQSENWNDTK KINITHAQE

Best Arabidopsis Sequence Match ( AT1G19180.2 )
(BLAST)

001: MSLFPCEASN MDSMVQDVKP TNLFPRQPSF SSSSSSLPKE DVLKMTQTTR SVKPESQTAP LTIFYAGQVI VFNDFSAEKA KEVINLASKG TANSLAKNQT
101: DIRSNIATIA NQVPHPRKTT TQEPIQSSPT PLTELPIARR ASLHRFLEKR KDRVTSKAPY QLCDPAKASS NPQTTGNMSW LGLAAEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.