Factsheet for Solyc12g009220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096050.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g118540.2.1
Solyc05g050560.1.1
Solyc05g052620.2.1
Solyc06g068930.1.1
Solyc06g072990.1.1
Solyc07g042170.2.1
Solyc08g005050.2.1
Solyc08g036620.2.1
Solyc08g036640.2.1
Solyc08g036660.2.1
Solyc08g076930.1.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19180.1	Solyc01g096050.2.1	AT1G01260.1	21798944
AT1G19180.1	Solyc05g050560.1.1	AT1G01260.1	21798944
AT1G19180.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT1G19180.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT1G19180.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT1G19180.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT1G19180.1	Solyc08g036620.2.1	AT1G30135.1	19309455
AT1G19180.1	Solyc08g036640.2.1	AT1G30135.1	19309455
AT1G19180.1	Solyc08g036660.2.1	AT1G30135.1	19309455
AT1G19180.1	Solyc08g005050.2.1	AT1G32640.1	18547396
AT1G19180.1	Solyc08g076930.1.1	AT1G32640.1	18547396
AT1G19180.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G19180.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G19180.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT1G19180.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT1G19180.1	Solyc05g052620.2.1	AT2G39940.1	17637677
AT1G19180.1	Solyc05g052620.2.1	AT2G39940.1	18547396
AT1G19180.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G19180.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT1G19180.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT1G19180.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT1G19180.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT1G19180.1	Solyc06g072990.1.1	AT5G24660.1	21798944
AT1G74950.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G74950.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G74950.1	Solyc05g052620.2.1	AT2G39940.1	18547396
AT1G74950.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G74950.1	Solyc06g068930.1.1	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007592	Potato	nucleus	86.51	85.83
Solyc07g042170.2.1	Tomato	cytosol	42.06	49.07
AT1G19180.1	Thale cress	cytosol	36.11	35.97
CDY46022	Canola	nucleus	33.73	35.42
Bra008172.1-P	Field mustard	nucleus	33.33	35.0
CDY41023	Canola	plastid	34.52	34.25
GSMUA_Achr5P22110_001	Banana	mitochondrion	33.33	34.01
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	36.11	33.96
GSMUA_Achr3P05920_001	Banana	nucleus	33.73	33.86
CDY26697	Canola	plastid	33.73	33.6
GSMUA_Achr9P14370_001	Banana	cytosol	34.92	33.21
Zm00001d020614_P001	Maize	cytosol, plastid	28.57	33.03
CDY37269	Canola	nucleus	31.35	32.92
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	31.35	32.78
Bra025713.1-P	Field mustard	plastid	32.94	32.68
GSMUA_Achr2P21770_001	Banana	mitochondrion	28.57	32.58
AT1G74950.1	Thale cress	cytosol	32.14	32.53
TraesCS2B01G195600.1	Wheat	plastid	29.76	32.47
GSMUA_Achr6P31050_001	Banana	cytosol	27.38	32.39
Bra031065.1-P	Field mustard	plastid	34.92	32.23
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	30.56	32.22
Bra016520.1-P	Field mustard	plastid	32.94	32.05
CDX96675	Canola	plastid	33.33	31.94
CDX73127	Canola	cytosol	30.95	31.84
Zm00001d022139_P001	Maize	plastid	29.37	31.76
TraesCS2D01G176800.1	Wheat	plastid	28.97	31.6
GSMUA_Achr3P02140_001	Banana	mitochondrion	26.19	31.58
CDX83781	Canola	plastid	32.94	31.44
GSMUA_Achr3P10270_001	Banana	cytosol	28.17	31.42
EER97533	Sorghum	plastid	28.97	31.06
GSMUA_Achr11P...	Banana	cytosol	28.57	31.03
Bra015880.1-P	Field mustard	cytosol	30.16	31.02
CDX85865	Canola	cytosol	27.38	30.8
GSMUA_AchrUn_...	Banana	nucleus	30.16	30.77
CDY45408	Canola	cytosol	29.76	30.61
Solyc12g049400.1.1	Tomato	cytosol	24.21	30.5
Os07t0615200-01	Rice	mitochondrion	29.37	30.33
EER98969	Sorghum	cytosol	26.59	30.32
EER92157	Sorghum	plastid	27.38	30.26
Os03t0402800-01	Rice	plastid	27.38	30.26
GSMUA_Achr10P...	Banana	cytosol	19.44	30.25
Bra003778.1-P	Field mustard	cytosol	26.59	30.18
CDX68156	Canola	cytosol	21.43	29.83
GSMUA_Achr7P19850_001	Banana	cytosol	28.17	29.34
Solyc01g103600.2.1	Tomato	nucleus	14.68	28.68
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	25.79	28.51
GSMUA_Achr8P16780_001	Banana	cytosol	28.57	28.46
Zm00001d005813_P002	Maize	cytosol, plastid	25.4	28.19
TraesCS2A01G169300.1	Wheat	plastid	25.0	27.27
Solyc03g122190.2.1	Tomato	nucleus	33.33	27.18
CDX73289	Canola	cytosol	20.24	27.13
Zm00001d006860_P001	Maize	plastid	28.57	27.07
Os09t0439200-01	Rice	plastid	24.6	26.72
TraesCS5B01G211000.1	Wheat	nucleus	23.81	26.09
TraesCS5D01G219300.2	Wheat	nucleus	23.81	26.09
GSMUA_Achr1P21870_001	Banana	mitochondrion	30.95	22.1
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	25.4	21.69
TraesCS5A01G212800.1	Wheat	plastid	25.0	21.28
CDX81917	Canola	plastid	36.51	18.11
CDY21679	Canola	plastid	34.52	15.96

Protein Annotations

MapMan:11.7.2.1.2	MapMan:15.5.45	UniProt:A7XXZ0	InterPro:CCT_CS	EMBL:EF591123	GO:GO:0003674
GO:GO:0003714	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347
GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320
PANTHER:PTHR33077	PANTHER:PTHR33077:SF13	SMART:SM00979	EnsemblPlantsGene:Solyc12g009220.1	EnsemblPlants:Solyc12g009220.1.1	InterPro:Tify_dom
UniParc:UPI00015C1908	SEG:seg	:	:	:	:

Description

Jasmonate ZIM-domain protein 1 [Source:UniProtKB/TrEMBL;Acc:A7XXZ0]

Coordinates

chr12:+:2502555..2504617

Molecular Weight (calculated)

28164.2 Da

IEP (calculated)

9.913

GRAVY (calculated)

-0.795

Length

252 amino acids

Sequence
(BLAST)

001: MGSSENMDSG KVTGQKSQFS QTCNLLSQFL KKKGSVGDLN NLGIYKTTFE STGSQQTATT TTTTMNLLPM IEKSSDSSSS SSSVETNPQK PMNLFPQEFD
101: FSKEQSTKKT ESWKPDQPEK AQMTIFYGGQ VIVFDDFPAD KANEIMKLAN KQNPTNNFTY PMIKNQKTAD QSGVSFGNKL IQELPKLSMP QPSVADLPIA
201: RRNSLTRFLE KRKDRVTSIA PYQISNNKKS KNEDNKAWLG LGAQFVKTEQ YF

Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.