Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 53.99 | 46.56 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 46.95 | 41.32 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 46.48 | 39.44 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 44.6 | 39.42 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 48.83 | 39.25 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 38.97 | 37.56 |
| GSMUA_Achr10P... | Banana | cytosol | 27.7 | 36.42 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 37.09 | 34.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.03 | 32.79 |
| EER98969 | Sorghum | cytosol | 33.8 | 32.58 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 34.27 | 32.16 |
| Bra015880.1-P | Field mustard | cytosol | 35.68 | 31.02 |
| CDY45408 | Canola | cytosol | 35.68 | 31.02 |
| Solyc07g042170.2.1 | Tomato | cytosol | 31.46 | 31.02 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 30.05 | 30.62 |
| PGSC0003DMT400075155 | Potato | nucleus | 30.52 | 30.23 |
| CDX73127 | Canola | cytosol | 34.74 | 30.2 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 35.68 | 30.04 |
| CDY46022 | Canola | nucleus | 33.8 | 30.0 |
| GSMUA_Achr11P... | Banana | cytosol | 32.39 | 29.74 |
| Bra008172.1-P | Field mustard | nucleus | 33.33 | 29.58 |
| CDY37269 | Canola | nucleus | 33.33 | 29.58 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 30.05 | 29.36 |
| AT1G74950.1 | Thale cress | cytosol | 34.27 | 29.32 |
| Bra003778.1-P | Field mustard | cytosol | 30.05 | 28.83 |
| CDX85865 | Canola | cytosol | 30.05 | 28.57 |
| CDY26697 | Canola | plastid | 33.8 | 28.46 |
| Os09t0439200-01 | Rice | plastid | 30.99 | 28.45 |
| Bra025713.1-P | Field mustard | plastid | 33.8 | 28.35 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 30.52 | 28.26 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 30.52 | 28.26 |
| AT1G19180.1 | Thale cress | cytosol | 32.86 | 27.67 |
| CDY41023 | Canola | plastid | 32.86 | 27.56 |
| PGSC0003DMT400007592 | Potato | nucleus | 32.86 | 27.56 |
| Solyc12g009220.1.1 | Tomato | nucleus | 32.39 | 27.38 |
| Bra016520.1-P | Field mustard | plastid | 32.39 | 26.64 |
| CDX96675 | Canola | plastid | 32.86 | 26.62 |
| CDX68156 | Canola | cytosol | 22.54 | 26.52 |
| CDX83781 | Canola | plastid | 31.92 | 25.76 |
| Bra031065.1-P | Field mustard | plastid | 32.39 | 25.27 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 41.78 | 25.21 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 30.52 | 24.25 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 15.96 | 21.94 |
| CDX73289 | Canola | cytosol | 19.25 | 21.81 |
| TraesCS5A01G212800.1 | Wheat | plastid | 30.05 | 21.62 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 29.11 | 21.02 |
| GSMUA_Achr10P... | Banana | cytosol | 15.96 | 19.21 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 16.43 | 18.92 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 18.31 | 17.81 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 13.62 | 17.68 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 16.43 | 15.35 |
| CDX81917 | Canola | plastid | 31.46 | 13.19 |
| CDY21679 | Canola | plastid | 33.33 | 13.03 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P31050_001 | EnsemblPlants:GSMUA_Achr6T31050_001 | EnsemblPlantsGene:GSMUA_Achr6G31050_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF19 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SMART:SM00979 |
| UniParc:UPI0002966FAF | UniProt:M0TBQ0 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 10B [Source:GMGC_GENE;Acc:GSMUA_Achr6G31050_001]
Coordinates
chr6:-:30955336..30957592
Molecular Weight (calculated)
23266.5 Da
IEP (calculated)
7.197
GRAVY (calculated)
-0.517
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEKIGTRS EKTQFSVTCR LLSQYLKEKG SFGSIGLELA PWPIHHQPQE KHQAPTTLSL LPGVDVSTED QTINNTDQNA PKSMELFPQH AGIDSESVRI
101: PSNIKTEKAQ LTIFYCGKVL VFDDFPADKA EDLLQMASKE SIAAQKIAFT APSSSTGADC SSQLETAHAN ASDMPIARKN SLHRFLMKRK DRISTKAPYQ
201: VHGGTEAPDL GKP
101: PSNIKTEKAQ LTIFYCGKVL VFDDFPADKA EDLLQMASKE SIAAQKIAFT APSSSTGADC SSQLETAHAN ASDMPIARKN SLHRFLMKRK DRISTKAPYQ
201: VHGGTEAPDL GKP
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
Arabidopsis Description
TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.