CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX74819
CDX84081
CDX92171
CDX93223
CDX93225
CDX95810
CDY07040
CDY07041
CDY20501
CDY24941
CDY26910
CDY60996

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74950.1	CDX73261	AT1G32640.1	19309455
AT1G74950.1	CDX84081	AT1G32640.1	19309455
AT1G74950.1	CDY26910	AT1G32640.1	19309455
AT1G74950.1	CDX74819	AT2G39940.1	18547396
AT1G74950.1	CDX93223	AT2G39940.1	18547396
AT1G74950.1	CDX93225	AT2G39940.1	18547396
AT1G74950.1	CDY07040	AT2G39940.1	18547396
AT1G74950.1	CDY07041	AT2G39940.1	18547396
AT1G74950.1	CDY20501	AT2G39940.1	18547396
AT1G74950.1	CDY24941	AT2G39940.1	18547396
AT1G74950.1	CDY60996	AT2G39940.1	18547396
AT1G74950.1	CDX92171	AT3G17860.1	19309455
AT1G74950.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85865	Canola	cytosol	82.87	66.96
Bra003778.1-P	Field mustard	cytosol	68.51	55.86
CDY45408	Canola	cytosol	56.35	41.63
CDY46022	Canola	nucleus	53.04	40.0
CDX73127	Canola	cytosol	53.04	39.18
CDY37269	Canola	nucleus	47.51	35.83
AT1G74950.1	Thale cress	cytosol	48.62	35.34
CDX73289	Canola	cytosol	31.49	30.32
CDX96675	Canola	plastid	38.67	26.62
CDY41023	Canola	plastid	37.02	26.38
GSMUA_Achr10P...	Banana	cytosol	23.2	25.93
Os03t0402800-01	Rice	plastid	32.6	25.88
CDY26697	Canola	plastid	35.91	25.69
CDX83781	Canola	plastid	37.02	25.38
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	31.49	25.0
Zm00001d022139_P001	Maize	plastid	32.04	24.89
EER97533	Sorghum	plastid	31.49	24.26
TraesCS2A01G169300.1	Wheat	plastid	30.94	24.24
Solyc07g042170.2.1	Tomato	cytosol	28.73	24.07
GSMUA_Achr2P21770_001	Banana	mitochondrion	29.28	23.98
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	34.81	23.51
GSMUA_Achr3P02140_001	Banana	mitochondrion	27.07	23.45
PGSC0003DMT400075155	Potato	nucleus	27.62	23.26
TraesCS2B01G195600.1	Wheat	plastid	29.28	22.94
TraesCS2D01G176800.1	Wheat	plastid	29.28	22.94
GSMUA_Achr6P31050_001	Banana	cytosol	26.52	22.54
GSMUA_Achr11P...	Banana	cytosol	28.73	22.41
EER92157	Sorghum	plastid	28.18	22.37
GSMUA_Achr3P10270_001	Banana	cytosol	27.62	22.12
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	28.73	21.76
Solyc12g009220.1.1	Tomato	nucleus	29.83	21.43
GSMUA_Achr8P16780_001	Banana	cytosol	29.83	21.34
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	28.18	21.16
Zm00001d006860_P001	Maize	plastid	30.94	21.05
GSMUA_Achr9P14370_001	Banana	cytosol	30.39	20.75
Zm00001d020614_P001	Maize	cytosol, plastid	24.86	20.64
Os07t0615200-01	Rice	mitochondrion	27.62	20.49
PGSC0003DMT400007592	Potato	nucleus	28.18	20.08
GSMUA_Achr3P05920_001	Banana	nucleus	27.62	19.92
EER98969	Sorghum	cytosol	24.31	19.91
CDY16574	Canola	cytoskeleton, cytosol, nucleus	21.55	19.6
TraesCS5D01G219300.2	Wheat	nucleus	24.86	19.57
GSMUA_AchrUn_...	Banana	nucleus	26.52	19.43
CDX92427	Canola	cytosol	21.55	19.4
CDY09086	Canola	cytosol	23.2	19.0
TraesCS5B01G211000.1	Wheat	nucleus	23.76	18.7
GSMUA_Achr5P22110_001	Banana	mitochondrion	25.41	18.62
GSMUA_Achr7P19850_001	Banana	cytosol	23.76	17.77
Zm00001d005813_P002	Maize	cytosol, plastid	21.55	17.18
Os09t0439200-01	Rice	plastid	21.55	16.81
CDY71173	Canola	nucleus	24.86	16.54
CDY03638	Canola	nucleus	24.86	16.48
CDY71875	Canola	cytosol	20.44	16.44
CDX96772	Canola	nucleus	23.76	16.1
TraesCS5A01G212800.1	Wheat	plastid	25.41	15.54
CDY26248	Canola	mitochondrion, nucleus	22.65	15.47
CDX81823	Canola	plastid	27.62	15.06
CDX81917	Canola	plastid	41.44	14.76
CDX72916	Canola	nucleus	22.1	14.76
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	23.76	14.58
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	22.65	14.14
CDY21679	Canola	plastid	41.99	13.95
GSMUA_Achr1P21870_001	Banana	mitochondrion	26.52	13.6
CDX96409	Canola	nucleus	19.89	13.14

Protein Annotations

EnsemblPlants:CDX68156	EnsemblPlantsGene:GSBRNA2T00099410001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF13	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDX68156	ProteinID:CDX68156.1
SMART:SM00979	UniParc:UPI0004EEF4BC	MapMan:11.7.2.1.2	MapMan:15.5.45	:	:

Description

BnaA07g21960D

Coordinates

chrLK031787:+:4178098..4178916

Molecular Weight (calculated)

19889.6 Da

IEP (calculated)

9.412

GRAVY (calculated)

-0.539

Length

181 amino acids

Sequence
(BLAST)

001: MMVNLFLCEA SGINSKAAQD VKLQNDMFPC QSSFSSSFGV KEEVVKITET KPVKPESQSA PLTLFYSGQV MLFDDFPAEK AKQVIDLANK GSPNGFTAEL
101: NNNQSAYTKY LAKNQKEIAS IPRPVPNPAK TAAQEPIQTN TSSLASELPI ARRASLHRFL EKRKDRITSK GPYQKEGSTE A

Best Arabidopsis Sequence Match ( AT1G19180.1 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.