Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017045.1-P | Field mustard | cytosol | 98.85 | 98.85 |
| CDX93225 | Canola | cytosol | 93.25 | 95.29 |
| CDY07041 | Canola | cytosol | 87.81 | 90.03 |
| CDX93223 | Canola | cytosol | 86.99 | 89.34 |
| CDY24941 | Canola | cytosol | 77.27 | 79.49 |
| CDX74819 | Canola | cytosol | 77.92 | 78.83 |
| CDY20501 | Canola | cytosol | 77.59 | 78.24 |
| AT2G39940.1 | Thale cress | cytosol | 74.96 | 76.86 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 77.59 | 67.0 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 63.26 | 64.21 |
| KRH14993 | Soybean | cytosol | 59.47 | 63.56 |
| KRH31107 | Soybean | cytosol | 61.45 | 63.22 |
| KRH73146 | Soybean | cytosol | 60.79 | 63.18 |
| KRG97777 | Soybean | cytosol | 61.12 | 62.88 |
| Solyc05g052620.2.1 | Tomato | cytosol | 62.27 | 62.69 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 57.5 | 59.86 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 54.37 | 58.93 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 58.48 | 58.87 |
| Zm00001d042833_P001 | Maize | cytosol | 54.37 | 55.18 |
| Os05t0449500-01 | Rice | cytosol | 54.2 | 55.11 |
| Zm00001d012338_P001 | Maize | cytosol | 53.87 | 54.87 |
| Os01t0853400-01 | Rice | cytosol | 53.54 | 54.62 |
| EES18318 | Sorghum | cytosol | 53.71 | 54.42 |
| EES01769 | Sorghum | cytosol | 53.21 | 54.19 |
| Zm00001d010082_P001 | Maize | cytosol | 53.38 | 54.09 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 15.32 | 54.07 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 52.72 | 53.87 |
| Zm00001d038273_P001 | Maize | cytosol | 53.05 | 53.76 |
| HORVU4Hr1G060950.3 | Barley | cytosol | 51.89 | 53.75 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 52.55 | 53.7 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 49.26 | 53.68 |
| TraesCS3D01G360400.2 | Wheat | cytosol | 52.55 | 53.61 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 52.22 | 53.55 |
| HORVU1Hr1G073230.1 | Barley | cytosol | 52.06 | 53.47 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 52.06 | 53.38 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 51.4 | 53.24 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 51.89 | 53.21 |
| TraesCS4A01G091200.1 | Wheat | cytosol | 51.24 | 53.07 |
| Os03t0265500-01 | Rice | plasma membrane | 51.4 | 52.97 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 50.91 | 52.73 |
| EER95129 | Sorghum | cytosol | 49.42 | 50.76 |
| Zm00001d028543_P001 | Maize | cytosol | 49.42 | 50.76 |
| Zm00001d047848_P001 | Maize | cytosol | 48.76 | 50.08 |
| CDY68868 | Canola | cytosol | 28.01 | 31.48 |
| CDY26594 | Canola | cytosol | 29.16 | 30.62 |
| CDX71968 | Canola | cytosol | 29.16 | 30.62 |
| CDY34211 | Canola | cytosol | 29.0 | 30.61 |
| CDY16034 | Canola | cytosol | 29.16 | 30.57 |
| CDY28523 | Canola | cytosol | 28.83 | 30.43 |
| CDY53998 | Canola | cytosol | 29.0 | 30.14 |
| CDY31282 | Canola | cytosol | 28.67 | 29.64 |
| CDY53774 | Canola | cytosol | 28.5 | 29.52 |
| CDY21068 | Canola | cytosol | 28.67 | 29.49 |
| CDY11468 | Canola | cytosol | 28.67 | 29.24 |
| CDX76680 | Canola | cytosol | 28.5 | 29.08 |
| CDX90899 | Canola | cytosol | 28.01 | 29.01 |
| CDX97301 | Canola | cytosol | 4.28 | 28.26 |
| CDY03450 | Canola | cytosol | 28.01 | 27.87 |
| CDY21439 | Canola | cytosol | 27.68 | 27.81 |
| CDX83172 | Canola | cytosol, plastid | 27.51 | 27.51 |
| CDY34286 | Canola | cytosol | 27.51 | 27.42 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 29.0 | 27.29 |
| CDY21947 | Canola | plastid, vacuole | 28.01 | 27.16 |
| CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 28.34 | 26.92 |
| CDX89163 | Canola | cytosol | 27.51 | 26.68 |
Protein Annotations
| EnsemblPlants:CDY07040 | EnsemblPlantsGene:GSBRNA2T00123357001 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF6 | ProteinID:CDY07040 | ProteinID:CDY07040.1 | SUPFAM:SSF52047 | UniParc:UPI0004EE758C |
| MapMan:11.7.2.1.1 | : | : | : | : | : |
Description
BnaA04g22750D
Coordinates
chrLK031974:-:809104..811277
Molecular Weight (calculated)
69053.4 Da
IEP (calculated)
5.622
GRAVY (calculated)
-0.270
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPDTKKLN RSTPWNADDV ISIVMPYVTD PKDRESASLV NRTWLRADSE TRYHVTMALC YASAPDRLSA RFPNLRSLKL KGKPRAAMFN LIPENWGGFV
101: TPWVNEIALS LRRIRSVHFR RMIVSDLDLD VLARARGDEL EVLKLDKCLG FSTDGLFTVV KHCRKIKTLL MDDSSFLEKD GKWLHELALH NTSLEVLNLY
201: MTEFTELSPR DLETIARNCH RSLVSVKIGD VEMLELLGFF KAAVNLEEFC GGALDEDPET PDKYKKLAFP PKLSRLGLTY LGANEMPILF PFAAQLRKLD
301: LIYSFLETND HCQLIEKCPN LEVLETRNVI GDKGLEVVAK CCKKLKRLRI ERGADEEEMD DERRGADEDG NEDLGYLVTQ RGLTALAHGC KELEYMAVYV
401: TDITNECLRT IGAYLTNLRD FRLVLLDQEE RIVADLPLDK GVRSLLRGCE KLRRFAFYLR PGGLTDVGLG YIGQYSPNVR WMLLGHVGET DEGLVEFSRE
501: GCCPKLQKLE MRGCCFSERA IAAAVMELPS LRYLWVQGYR ASETGQDLRV MSRPNWNIEL IQARRVPEAD EMGDVSEVEH PAHILAYYSL AGQRTDCPPT
601: VKVLREL
101: TPWVNEIALS LRRIRSVHFR RMIVSDLDLD VLARARGDEL EVLKLDKCLG FSTDGLFTVV KHCRKIKTLL MDDSSFLEKD GKWLHELALH NTSLEVLNLY
201: MTEFTELSPR DLETIARNCH RSLVSVKIGD VEMLELLGFF KAAVNLEEFC GGALDEDPET PDKYKKLAFP PKLSRLGLTY LGANEMPILF PFAAQLRKLD
301: LIYSFLETND HCQLIEKCPN LEVLETRNVI GDKGLEVVAK CCKKLKRLRI ERGADEEEMD DERRGADEDG NEDLGYLVTQ RGLTALAHGC KELEYMAVYV
401: TDITNECLRT IGAYLTNLRD FRLVLLDQEE RIVADLPLDK GVRSLLRGCE KLRRFAFYLR PGGLTDVGLG YIGQYSPNVR WMLLGHVGET DEGLVEFSRE
501: GCCPKLQKLE MRGCCFSERA IAAAVMELPS LRYLWVQGYR ASETGQDLRV MSRPNWNIEL IQARRVPEAD EMGDVSEVEH PAHILAYYSL AGQRTDCPPT
601: VKVLREL
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.