Factsheet for VIT_13s0019g03380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g03210.t01
VIT_11s0016g00710.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_13s0019g03380.t01
VIT_14s0171g00270.t01
VIT_17s0000g02230.t01
VIT_18s0001g12250.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39940.1	VIT_11s0016g00710.t01	AT1G19180.1	17637677
AT2G39940.1	VIT_11s0016g00710.t01	AT1G19180.1	18547396
AT2G39940.1	VIT_11s0016g00710.t01	AT1G74950.1	18547396
AT2G39940.1	VIT_13s0019g03380.t01	AT2G39940.1	12724535
AT2G39940.1	VIT_17s0000g02230.t01	AT3G17860.1	17637675
AT2G39940.1	VIT_17s0000g02230.t01	AT3G17860.1	18547396
AT2G39940.1	VIT_17s0000g02230.t01	AT3G17860.1	19309455
AT2G39940.1	VIT_12s0055g00390.t01	AT4G14110.1	12724535
AT2G39940.1	VIT_07s0031g03210.t01	AT5G08590.1	12172031
AT2G39940.1	VIT_07s0031g03210.t01	AT5G08590.1	14749489
AT2G39940.1	VIT_14s0171g00270.t01	AT5G14250.1	12724535
AT2G39940.1	VIT_18s0001g14860.t01	AT5G42190.1	12172031
AT2G39940.1	VIT_18s0001g14860.t01	AT5G42190.1	12445118
AT2G39940.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489
AT2G39940.1	VIT_12s0035g01450.t01	AT5G42970.1	12724535
AT2G39940.1	VIT_18s0001g12250.t01	AT5G42970.1	12724535

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14993	Soybean	cytosol	73.91	77.82
KRH31107	Soybean	cytosol	76.25	77.29
KRH73146	Soybean	cytosol	75.25	77.05
KRG97777	Soybean	cytosol	75.92	76.95
Solyc05g052620.2.1	Tomato	cytosol	73.24	72.64
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	68.73	70.5
AT2G39940.1	Thale cress	cytosol	69.23	69.93
Bra000156.1-P	Field mustard	cytosol	68.9	69.83
CDY24941	Canola	cytosol	68.9	69.83
CDX74819	Canola	cytosol	68.73	68.5
Bra005000.1-P	Field mustard	cytosol	69.06	68.49
CDY20501	Canola	cytosol	68.9	68.44
GSMUA_Achr9P03690_001	Banana	cytosol	68.73	68.16
GSMUA_Achr5P28930_001	Banana	cytosol	63.38	67.68
CDX93223	Canola	cytosol	64.55	65.31
CDX93225	Canola	cytosol	64.72	65.15
CDY07041	Canola	cytosol	64.21	64.86
Bra017044.1-P	Field mustard	cytosol	64.21	63.58
CDY07040	Canola	cytosol	64.21	63.26
Bra017045.1-P	Field mustard	cytosol	64.21	63.26
Os05t0449500-01	Rice	cytosol	61.87	61.98
HORVU4Hr1G060950.3	Barley	cytosol	60.37	61.6
Os01t0853400-01	Rice	cytosol	61.2	61.51
HORVU3Hr1G085210.2	Barley	cytosol	60.87	61.28
TraesCS3A01G367500.1	Wheat	cytosol	57.02	61.22
TraesCS3B01G399200.1	Wheat	cytosol	60.7	61.11
Zm00001d012338_P001	Maize	cytosol	60.87	61.07
EES18318	Sorghum	cytosol	61.04	60.93
TraesCS4D01G214200.1	Wheat	cytosol	59.7	60.92
TraesCS3D01G360400.2	Wheat	cytosol	60.54	60.84
TraesCS4A01G091200.1	Wheat	cytosol	59.53	60.75
HORVU1Hr1G073230.1	Barley	cytosol	60.03	60.74
Zm00001d010082_P001	Maize	cytosol	60.7	60.6
Zm00001d042833_P001	Maize	cytosol	60.54	60.54
TraesCS1D01G278400.1	Wheat	cytosol	59.87	60.47
TraesCS1A01G279100.1	Wheat	cytosol	59.7	60.3
TraesCS1B01G288100.1	Wheat	cytosol	59.7	60.3
Zm00001d038273_P001	Maize	cytosol	60.37	60.27
TraesCS4B01G213500.1	Wheat	cytosol	59.03	60.24
Os03t0265500-01	Rice	plasma membrane	59.2	60.1
EER95129	Sorghum	cytosol	59.2	59.9
GSMUA_Achr8P02350_001	Banana	cytosol	17.22	59.88
Zm00001d028543_P001	Maize	cytosol	59.03	59.73
Zm00001d047848_P001	Maize	cytosol	58.86	59.56
EES01769	Sorghum	cytosol	59.03	59.23
CDY60996	Canola	endoplasmic reticulum, golgi	68.73	58.46
VIT_07s0104g01320.t01	Wine grape	cytosol	32.44	33.68
VIT_18s0001g07120.t01	Wine grape	cytosol	32.61	32.83
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	8.03	32.65
VIT_14s0030g01240.t01	Wine grape	cytosol	31.44	32.36
VIT_00s0181g00040.t01	Wine grape	nucleus	31.44	32.25
VIT_14s0068g01330.t01	Wine grape	cytosol	30.43	31.82
VIT_01s0146g00450.t01	Wine grape	cytosol	27.76	28.62
VIT_05s0020g00220.t01	Wine grape	cytosol	11.04	27.73
VIT_05s0020g04830.t01	Wine grape	cytosol	10.87	27.31

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100254771	wikigene:100254771	MapMan:11.7.2.1.1	Gene3D:3.80.10.10	ProteinID:AFF57759
ProteinID:AFF57759.1	ProteinID:CBI31536	ProteinID:CBI31536.3	UniProt:D7TMG9	InterPro:F-box-like_dom_sf	EMBL:FN595998
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605
GO:GO:0009607	GO:GO:0009611	GO:GO:0009625	GO:GO:0009628	GO:GO:0009641	GO:GO:0009719
GO:GO:0009753	GO:GO:0009791	GO:GO:0009867	GO:GO:0009901	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0010118	GO:GO:0010218	GO:GO:0019538	GO:GO:0031146	GO:GO:0031348
GO:GO:0042742	GO:GO:0048364	GO:GO:0048443	GO:GO:0050832	InterPro:IPR032675	EMBL:JQ281907
EntrezGene:LOC100254771	wikigene:LOC100254771	InterPro:LRR_dom_sf	PANTHER:PTHR43944	PANTHER:PTHR43944:SF6	SUPFAM:SSF52047
SUPFAM:SSF81383	TIGR:TC59298	UniParc:UPI00015CA150	ArrayExpress:VIT_13s0019g03380	EnsemblPlantsGene:VIT_13s0019g03380	EnsemblPlants:VIT_13s0019g03380.t01
unigene:Vvi.6822	RefSeq:XP_002276145	RefSeq:XP_002276145.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:4412475..4417408

Molecular Weight (calculated)

67877.5 Da

IEP (calculated)

6.061

GRAVY (calculated)

-0.106

Length

598 amino acids

Sequence
(BLAST)

001: MEDGNERKVS REMLDMADRG MSDEVLNCVM PYIHDPKDRD AVSLVCRRWY ELDALTRKHI TIALCYTTTP GRLRGRFPHL ESLKLKGKPR AAMFNLIMED
101: WGGYVTPWVK EISDYFDCLK SLHFRRMIVK DSDLQLLAQA RGRVLLVLKL DKCSGFSTDG LLHVGRSCRN LRTLFLEESQ IVDKDGEWLH ELAMNNTVLE
201: TLNFYMTELA TVQFEDLELI ARNCRSLTSM KISDFEILDL VGFFRAATAL EEFAGGSFSE QSDKYSAVSF PPKLCRLGLN YMGKNEMPIV FPFASLLKKL
301: DLLYCLLDTE DHCLLIQKCP NLEFLEARNV IGDRGLEVLA QSCKKLRRLR IERGADEQEM EDEEGVVSQR GLMALARGCL EIEYVAIYVS DITNAALECI
401: GAHSKKLCDF RLVLLEREER ITDLPLDNGV RALLRGCQKL RRFALYLRSG GLTDVGLNYI GQYSPNVRWM LLGYVGESDA GLLEFSRGCP SLQKLEMRGC
501: CFSERALAVA AMQLTSLRYL WVQGYRASET GRDLLVMARP FWNIELIPSR GVTINAPDRE PVSIEHPAHI LAYYSLAGPR TDFPSTVTPL DPASFLTL

Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)

001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI

Arabidopsis Description

COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.