Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0068g01330.t01 | Wine grape | cytosol | 62.07 | 62.94 |
| VIT_12s0035g00130.t01 | Wine grape | cytosol, extracellular, nucleus | 13.45 | 53.06 |
| VIT_07s0104g01320.t01 | Wine grape | cytosol | 49.83 | 50.17 |
| VIT_14s0030g01240.t01 | Wine grape | cytosol | 48.62 | 48.54 |
| VIT_00s0181g00040.t01 | Wine grape | nucleus | 45.86 | 45.63 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 45.17 | 44.11 |
| VIT_05s0020g00220.t01 | Wine grape | cytosol | 17.07 | 41.6 |
| VIT_05s0020g04830.t01 | Wine grape | cytosol | 16.21 | 39.5 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 28.62 | 27.76 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100252378 | wikigene:100252378 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 |
| ProteinID:CCB60864 | ProteinID:CCB60864.1 | UniProt:F6I1P7 | EMBL:FN596513 | InterPro:IPR032675 | EntrezGene:LOC100252378 |
| wikigene:LOC100252378 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF9 | SMART:SM00367 |
| SUPFAM:SSF52047 | TIGR:TC53344 | UniParc:UPI0001982A17 | ArrayExpress:VIT_01s0146g00450 | EnsemblPlantsGene:VIT_01s0146g00450 | EnsemblPlants:VIT_01s0146g00450.t01 |
| unigene:Vvi.14646 | RefSeq:XP_002262856 | RefSeq:XP_002262856.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1:-:22308498..22311372
Molecular Weight (calculated)
64575.1 Da
IEP (calculated)
8.638
GRAVY (calculated)
0.018
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYFPAEVLE RIFALLTSQR DRNSVCLVCK YWWKVEAGCR LRVSVKNCYA LGPNRVLARF PRMRALSLKG KPHFAGLNMV NWGGFALPWI EFFAKNCPWL
101: QELRLKRMVV SDQSLQMISL SFSEFESLSL IRCGGFSPVG LAAIASNCRF LKELVLLENE VEEDIGHILG VGVGDGIGQW LSCFPESCSS LVSLNFACTK
201: GVVNLEALEK LVARCPNLRS LRLNRRVPPN VLQRLLQQAP QLEDLGIGSF SNYTDRRTYL RLQNAVSKCR SIRSLSGFSS FTPLYQAAIY PMCSNLISLN
301: LSKAVELPAH SLMEIISRCK KLQNLWVLDN IGDKGLGLVA DTCKNLQVLR VFRLGSHNEG NPALTEEGLI AISMGCPQLH SLVYCCDQMT NASLITVARN
401: CPNLTNFKLC INDPKTPDHT TSQPFDEGFG AIVQSCKGLR RLSLSGLLSD QVFLYIGMYA EQLEMLSIGS SGGGDKELSY VLNGCRNLMK LEIKGSPFVD
501: AGLLEEIVKH EKIRCLWISS SKVTLGGCRA LSMQVPMMNI EIIGENNKMK KDDDHKVGKM YLYRTLNGPR KDAPASVWTL
101: QELRLKRMVV SDQSLQMISL SFSEFESLSL IRCGGFSPVG LAAIASNCRF LKELVLLENE VEEDIGHILG VGVGDGIGQW LSCFPESCSS LVSLNFACTK
201: GVVNLEALEK LVARCPNLRS LRLNRRVPPN VLQRLLQQAP QLEDLGIGSF SNYTDRRTYL RLQNAVSKCR SIRSLSGFSS FTPLYQAAIY PMCSNLISLN
301: LSKAVELPAH SLMEIISRCK KLQNLWVLDN IGDKGLGLVA DTCKNLQVLR VFRLGSHNEG NPALTEEGLI AISMGCPQLH SLVYCCDQMT NASLITVARN
401: CPNLTNFKLC INDPKTPDHT TSQPFDEGFG AIVQSCKGLR RLSLSGLLSD QVFLYIGMYA EQLEMLSIGS SGGGDKELSY VLNGCRNLMK LEIKGSPFVD
501: AGLLEEIVKH EKIRCLWISS SKVTLGGCRA LSMQVPMMNI EIIGENNKMK KDDDHKVGKM YLYRTLNGPR KDAPASVWTL
001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL
Arabidopsis Description
AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.