Factsheet for VIT_12s0035g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g01320.t01	Wine grape	cytosol	85.71	21.88
GSMUA_Achr5P26930_001	Banana	cytosol	54.42	17.24
VIT_14s0030g01240.t01	Wine grape	cytosol	67.35	17.04
VIT_05s0020g00220.t01	Wine grape	cytosol	26.53	16.39
GSMUA_Achr3P23850_001	Banana	cytosol	63.27	15.98
VIT_14s0068g01330.t01	Wine grape	cytosol	61.22	15.73
VIT_05s0020g04830.t01	Wine grape	cytosol	25.17	15.55
Os05t0150500-00	Rice	plastid	58.5	14.65
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	57.14	14.26
KXG21312	Sorghum	plastid	57.14	14.21
TraesCS1A01G091300.1	Wheat	cytosol	57.14	14.19
Zm00001d010863_P001	Maize	plastid	56.46	14.07
VIT_00s0181g00040.t01	Wine grape	nucleus	55.78	14.07
TraesCS1D01G099900.1	Wheat	cytosol	57.14	14.0
VIT_01s0146g00450.t01	Wine grape	cytosol	53.06	13.45
VIT_18s0001g07120.t01	Wine grape	cytosol	51.7	12.79
HORVU1Hr1G021550.4	Barley	cytosol	55.1	12.62
VIT_13s0019g03380.t01	Wine grape	cytosol	32.65	8.03
Solyc06g007840.2.1	Tomato	extracellular, plastid	4.08	7.32
Solyc05g009260.1.1	Tomato	extracellular	1.36	2.47
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	1.36	1.75
PGSC0003DMT400008765	Potato	cytosol	0.68	0.93

Protein Annotations

ArrayExpress:VIT_12s0035g00130	EMBL:FN595990	EnsemblPlants:VIT_12s0035g00130.t01	EnsemblPlantsGene:VIT_12s0035g00130	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	ProteinID:CBI29780	ProteinID:CBI29780.3	SUPFAM:SSF52047
UniParc:UPI0001BE3880	UniProt:D7TH08	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:-:19282904..19283633

Molecular Weight (calculated)

16217.0 Da

IEP (calculated)

7.212

GRAVY (calculated)

0.173

Length

147 amino acids

Sequence
(BLAST)

001: MAMAYPMLEE LRLKRMVMTD ESLELISRSF KNFKVLVLSS CEGFSTDGLA AIAANCRNLT ELDLRESEVD DFSGHWLTHF PDSCISLVSL NISCLASGVS
101: FSALERLVGR CPSLRTLRPK LMLRMDALGL PMARTLGLSW SPGPKGC

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.