Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G091300.1 | Wheat | cytosol | 98.81 | 98.31 |
| TraesCS1D01G099900.1 | Wheat | cytosol | 98.64 | 96.83 |
| Os05t0150500-00 | Rice | plastid | 89.13 | 89.44 |
| HORVU1Hr1G021550.4 | Barley | cytosol | 95.59 | 87.69 |
| KXG21312 | Sorghum | plastid | 87.1 | 86.8 |
| Zm00001d010863_P001 | Maize | plastid | 85.91 | 85.76 |
| GSMUA_Achr5P26930_001 | Banana | cytosol | 56.03 | 71.12 |
| GSMUA_Achr3P23850_001 | Banana | cytosol | 69.78 | 70.62 |
| Solyc06g008470.1.1 | Tomato | extracellular | 6.79 | 70.18 |
| PGSC0003DMT400093216 | Potato | mitochondrion | 16.3 | 62.75 |
| Solyc06g008440.1.1 | Tomato | extracellular | 6.79 | 62.5 |
| VIT_07s0104g01320.t01 | Wine grape | cytosol | 60.44 | 61.81 |
| PGSC0003DMT400029517 | Potato | cytosol | 60.44 | 61.27 |
| Solyc09g074520.2.1 | Tomato | cytosol | 60.44 | 61.27 |
| KRG96377 | Soybean | cytosol | 60.78 | 60.99 |
| KRH71533 | Soybean | cytosol | 60.44 | 60.85 |
| KRH31921 | Soybean | cytosol | 60.27 | 60.68 |
| VIT_14s0030g01240.t01 | Wine grape | cytosol | 59.76 | 60.59 |
| KRH68108 | Soybean | cytosol | 59.93 | 60.24 |
| PGSC0003DMT400053430 | Potato | cytosol | 27.5 | 60.22 |
| CDY53998 | Canola | cytosol | 59.25 | 59.76 |
| CDY68868 | Canola | cytosol | 54.67 | 59.63 |
| CDY53774 | Canola | cytosol | 58.74 | 59.04 |
| Bra000842.1-P | Field mustard | cytosol | 58.57 | 58.87 |
| Bra034191.1-P | Field mustard | cytosol | 58.23 | 58.63 |
| AT4G03190.1 | Thale cress | cytosol, plastid | 58.06 | 58.46 |
| Bra003518.1-P | Field mustard | cytosol | 58.91 | 58.42 |
| CDX90899 | Canola | cytosol | 58.06 | 58.36 |
| PGSC0003DMT400061752 | Potato | plastid | 57.39 | 58.28 |
| AT3G62980.1 | Thale cress | cytosol | 58.57 | 58.08 |
| CDY11468 | Canola | cytosol | 58.06 | 57.48 |
| Bra007720.1-P | Field mustard | cytosol | 58.06 | 57.48 |
| PGSC0003DMT400056570 | Potato | cytosol | 57.89 | 57.41 |
| CDX76680 | Canola | cytosol | 57.89 | 57.31 |
| VIT_12s0035g00130.t01 | Wine grape | cytosol, extracellular, nucleus | 14.26 | 57.14 |
| Solyc06g008460.1.1 | Tomato | extracellular | 22.58 | 56.12 |
| TraesCS2B01G302900.1 | Wheat | cytosol | 54.5 | 55.92 |
| Solyc06g008810.2.1 | Tomato | cytosol | 39.22 | 54.87 |
| CDY21947 | Canola | plastid, vacuole | 57.89 | 54.47 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 58.91 | 53.8 |
| CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 58.23 | 53.68 |
| PGSC0003DMT400013682 | Potato | cytosol, mitochondrion | 12.73 | 53.57 |
| PGSC0003DMT400008765 | Potato | cytosol | 9.68 | 53.27 |
| TraesCS5B01G280100.1 | Wheat | cytosol | 51.27 | 52.8 |
| Bra014378.1-P | Field mustard | cytosol | 52.29 | 49.2 |
| CDX89163 | Canola | cytosol | 52.29 | 49.2 |
| Solyc06g007840.2.1 | Tomato | extracellular, plastid | 6.79 | 48.78 |
| Solyc06g008780.1.1 | Tomato | extracellular | 39.9 | 47.38 |
| Solyc05g009260.1.1 | Tomato | extracellular | 6.45 | 46.91 |
| TraesCS6B01G345800.1 | Wheat | plastid | 46.52 | 42.48 |
| TraesCS7B01G081200.1 | Wheat | cytosol | 44.99 | 42.4 |
| Solyc06g007830.1.1 | Tomato | endoplasmic reticulum, extracellular | 7.64 | 39.47 |
| Solyc06g084490.1.1 | Tomato | plastid | 11.71 | 32.86 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 29.54 | 29.29 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 28.86 | 29.01 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 28.18 | 28.04 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G119100.1 | EnsemblPlantsGene:TraesCS1B01G119100 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF7 | PFAM:PF00646 | SEG:seg | SMART:SM00367 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
No Description!
Coordinates
chr1B:-:140295923..140300604
Molecular Weight (calculated)
64481.8 Da
IEP (calculated)
6.414
GRAVY (calculated)
0.054
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGGARDGA GHAAPPWHLL PDEVLEHAFS FLPAAADRGA AAAVCHGWLG AERRSRRRLA VANCYAAAPR DAVDRFPSVR AAEVKGKPHF ADFGLVPPAW
101: GAEAAPWVAA AADGWPLLEE LSFKRMVVTD ECLEMIASSF KNFQVLRLVS CEGFSTAGLA AITEGCRNLR ELDLQENYIE DCSSHWLSYF PESFTCLETL
201: NFSCLEGEVN FTVLERLVSR CRNLKTLKLN NAIPLDKVAS LLRKAPQLVE LGTGKFSAEY HSDLFAKLEA AFAGCKSLRR LSGAWDAVPD YLPAFYCVCE
301: GLTSLNLSYA TVRGPELIKF ISRCKNLQQL WVMDLIEDHG LAVVAGSCSK LQELRVFPSD PFGAGQVLLT ERGLVDVSAS CPMLESVLYF CGQMTNEALI
401: TIAKNRPNFT CFRLCILEPR TPDYVTRQSL DAGFSAIVES CKGLRRLSVS GLLTDLVFKS IGANGNCLEM LSIAFAGNSD LGLHYILSGC KSLKKLEIRD
501: CPFGNKPLLA NAAKLETMRS LWMSSCSLTL GACRQLAEKM PRLTVEIMND PGRTCPVESL PDDSPVETLY VYRTIAGPRS DTPDYVQIV
101: GAEAAPWVAA AADGWPLLEE LSFKRMVVTD ECLEMIASSF KNFQVLRLVS CEGFSTAGLA AITEGCRNLR ELDLQENYIE DCSSHWLSYF PESFTCLETL
201: NFSCLEGEVN FTVLERLVSR CRNLKTLKLN NAIPLDKVAS LLRKAPQLVE LGTGKFSAEY HSDLFAKLEA AFAGCKSLRR LSGAWDAVPD YLPAFYCVCE
301: GLTSLNLSYA TVRGPELIKF ISRCKNLQQL WVMDLIEDHG LAVVAGSCSK LQELRVFPSD PFGAGQVLLT ERGLVDVSAS CPMLESVLYF CGQMTNEALI
401: TIAKNRPNFT CFRLCILEPR TPDYVTRQSL DAGFSAIVES CKGLRRLSVS GLLTDLVFKS IGANGNCLEM LSIAFAGNSD LGLHYILSGC KSLKKLEIRD
501: CPFGNKPLLA NAAKLETMRS LWMSSCSLTL GACRQLAEKM PRLTVEIMND PGRTCPVESL PDDSPVETLY VYRTIAGPRS DTPDYVQIV
001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK
Arabidopsis Description
GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.