Factsheet for Solyc06g007830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009260.1.1	Tomato	extracellular	52.63	74.07
Solyc06g008470.1.1	Tomato	extracellular	35.09	70.18
Solyc06g008440.1.1	Tomato	extracellular	7.89	14.06
PGSC0003DMT400008765	Potato	cytosol	13.16	14.02
Solyc06g008810.2.1	Tomato	cytosol	47.37	12.83
GSMUA_Achr5P26930_001	Banana	cytosol	43.86	10.78
KRG96377	Soybean	cytosol	50.0	9.71
Solyc09g074520.2.1	Tomato	cytosol	49.12	9.64
Bra003518.1-P	Field mustard	cytosol	50.0	9.6
CDY53998	Canola	cytosol	49.12	9.59
KRH31921	Soybean	cytosol	49.12	9.57
KRH68108	Soybean	cytosol	49.12	9.56
AT3G62980.1	Thale cress	cytosol	49.12	9.43
KRH71533	Soybean	cytosol	48.25	9.4
CDY11468	Canola	cytosol	48.25	9.24
CDX76680	Canola	cytosol	48.25	9.24
Bra007720.1-P	Field mustard	cytosol	48.25	9.24
CDX67912	Canola	endoplasmic reticulum, golgi	50.0	8.84
GSMUA_Achr3P23850_001	Banana	cytosol	44.74	8.76
Zm00001d010863_P001	Maize	plastid	42.98	8.31
Solyc06g008780.1.1	Tomato	extracellular	35.96	8.27
Os05t0150500-00	Rice	plastid	42.11	8.18
KXG21312	Sorghum	plastid	42.11	8.12
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	39.47	7.64
TraesCS1A01G091300.1	Wheat	cytosol	39.47	7.6
CDY68868	Canola	cytosol	35.96	7.59
TraesCS1D01G099900.1	Wheat	cytosol	38.6	7.33
Solyc02g079190.2.1	Tomato	cytosol	36.84	7.16
HORVU1Hr1G021550.4	Barley	cytosol	39.47	7.01
Solyc04g074980.2.1	Tomato	cytosol	35.96	6.58
CDX89163	Canola	cytosol	24.56	4.47
Bra014378.1-P	Field mustard	cytosol	24.56	4.47
Solyc05g052620.2.1	Tomato	cytosol	21.93	4.15
Solyc06g084490.1.1	Tomato	plastid	6.14	3.33
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	1.75	1.36
Solyc06g007840.2.1	Tomato	extracellular, plastid	0.88	1.22
Solyc06g008460.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g007830.1.1	EnsemblPlantsGene:Solyc06g007830.1	Gene3D:3.80.10.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	TMHMM:TMhelix	UniParc:UPI000276632F
UniProt:K4C3G4	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:1748101..1748445

Molecular Weight (calculated)

12777.1 Da

IEP (calculated)

7.837

GRAVY (calculated)

0.496

Length

114 amino acids

Sequence
(BLAST)

001: MLSLAFLEDK HLCLHYVLSG CDSLRKLEIR DCPFGDEALL SNGAKLERCN PLGCLNCSVC ILLAQKLPGL NVEVIDGKVI RTRDKKVSLC IIMYPLVTCF
101: LVKWCCHVLL SMYS

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.