Factsheet for Solyc06g008440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	peroxisome, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007840.2.1	Tomato	extracellular, plastid	31.25	24.39
Solyc06g008470.1.1	Tomato	extracellular	20.31	22.81
Solyc06g008810.2.1	Tomato	cytosol	87.5	13.3
Solyc05g009260.1.1	Tomato	extracellular	15.62	12.35
Solyc06g008780.1.1	Tomato	extracellular	87.5	11.29
Solyc09g074520.2.1	Tomato	cytosol	84.38	9.29
GSMUA_Achr5P26930_001	Banana	cytosol	67.19	9.27
CDY68868	Canola	cytosol	76.56	9.07
KRH68108	Soybean	cytosol	81.25	8.87
PGSC0003DMT400061752	Potato	plastid	79.69	8.79
KRG96377	Soybean	cytosol	79.69	8.69
CDY53998	Canola	cytosol	78.12	8.56
KRH71533	Soybean	cytosol	78.12	8.55
KRH31921	Soybean	cytosol	78.12	8.55
Bra003518.1-P	Field mustard	cytosol	76.56	8.25
AT3G62980.1	Thale cress	cytosol	76.56	8.25
CDY11468	Canola	cytosol	76.56	8.24
Bra007720.1-P	Field mustard	cytosol	76.56	8.24
CDX76680	Canola	cytosol	75.0	8.07
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	14.06	7.89
CDX89163	Canola	cytosol	76.56	7.83
Bra014378.1-P	Field mustard	cytosol	76.56	7.83
CDX67912	Canola	endoplasmic reticulum, golgi	76.56	7.6
GSMUA_Achr3P23850_001	Banana	cytosol	64.06	7.04
Os05t0150500-00	Rice	plastid	64.06	6.98
Solyc02g079190.2.1	Tomato	cytosol	64.06	6.98
Zm00001d010863_P001	Maize	plastid	64.06	6.95
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	62.5	6.79
KXG21312	Sorghum	plastid	62.5	6.77
TraesCS1A01G091300.1	Wheat	cytosol	62.5	6.76
TraesCS1D01G099900.1	Wheat	cytosol	62.5	6.67
Solyc06g008460.1.1	Tomato	extracellular	23.44	6.33
HORVU1Hr1G021550.4	Barley	cytosol	62.5	6.23
Solyc04g074980.2.1	Tomato	cytosol	53.12	5.46
Solyc05g052620.2.1	Tomato	cytosol	28.12	2.99
Solyc06g084490.1.1	Tomato	plastid	6.25	1.9

Protein Annotations

EnsemblPlants:Solyc06g008440.1.1	EnsemblPlantsGene:Solyc06g008440.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	UniParc:UPI0002766723	UniProt:K4C3M4	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:+:2353805..2354104

Molecular Weight (calculated)

7225.0 Da

IEP (calculated)

4.426

GRAVY (calculated)

0.564

Length

64 amino acids

Sequence
(BLAST)

1: MGCPKLQSVL YFCLQMINDA LVTIELQQLS LSGILTDRVF EYIWVHAKKL EMLSLAFAGD SDLC

Best Arabidopsis Sequence Match ( AT4G03190.1 )
(BLAST)

001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK

Arabidopsis Description

GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.