CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92429
KRG92430
KRH03236
KRH28611
KRH34375
KRH34377
KRH54335
KRH54336
KRH57122
KRH63609
KRH69048
KRH76867

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	KRG92429	AT1G04250.1	11713520
AT3G62980.1	KRH34377	AT1G04250.1	11713520
AT3G62980.1	KRG92429	AT3G23050.1	11713520
AT3G62980.1	KRH34377	AT3G23050.1	11713520
AT3G62980.1	KRG92430	AT4G14560.1	15546359
AT3G62980.1	KRH34375	AT4G14560.1	15546359
AT3G62980.1	KRH69048	AT4G14560.1	15546359
AT3G62980.1	KRH28611	AT4G36800.1	12682009
AT3G62980.1	KRH76867	AT4G36800.1	12682009
AT3G62980.1	KRH03236	AT5G63110.1	12445118
AT3G62980.1	KRH54335	AT5G63110.1	12445118
AT3G62980.1	KRH54336	AT5G63110.1	12445118
AT3G62980.1	KRH57122	AT5G63110.1	12445118
AT3G62980.1	KRH63609	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71533	Soybean	cytosol	98.12	98.12
KRG96377	Soybean	cytosol	85.13	84.84
KRH68108	Soybean	cytosol	83.76	83.62
VIT_07s0104g01320.t01	Wine grape	cytosol	78.8	80.03
CDY68868	Canola	cytosol	73.68	79.81
CDY53998	Canola	cytosol	78.46	78.6
Solyc06g008440.1.1	Tomato	extracellular	8.55	78.12
AT3G62980.1	Thale cress	cytosol	79.32	78.11
CDY11468	Canola	cytosol	79.32	77.98
Bra007720.1-P	Field mustard	cytosol	78.97	77.65
Solyc06g008470.1.1	Tomato	extracellular	7.52	77.19
CDX76680	Canola	cytosol	78.46	77.14
PGSC0003DMT400029517	Potato	cytosol	76.58	77.11
Solyc09g074520.2.1	Tomato	cytosol	76.41	76.94
Bra003518.1-P	Field mustard	cytosol	77.95	76.77
PGSC0003DMT400053430	Potato	cytosol	34.36	74.72
PGSC0003DMT400056570	Potato	cytosol	74.02	72.9
PGSC0003DMT400061752	Potato	plastid	71.45	72.07
Solyc06g008810.2.1	Tomato	cytosol	51.28	71.26
PGSC0003DMT400093216	Potato	mitochondrion	18.63	71.24
CDX67912	Canola	endoplasmic reticulum, golgi	78.12	70.85
Solyc06g008460.1.1	Tomato	extracellular	28.38	70.04
GSMUA_Achr5P26930_001	Banana	cytosol	54.19	68.32
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	16.24	67.86
Bra014378.1-P	Field mustard	cytosol	72.48	67.73
CDX89163	Canola	cytosol	72.14	67.41
GSMUA_Achr3P23850_001	Banana	cytosol	64.96	65.29
PGSC0003DMT400008765	Potato	cytosol	11.45	62.62
Zm00001d010863_P001	Maize	plastid	61.2	60.68
Os05t0150500-00	Rice	plastid	60.68	60.48
KXG21312	Sorghum	plastid	61.03	60.41
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	60.68	60.27
TraesCS1A01G091300.1	Wheat	cytosol	60.68	59.97
KRH06858	Soybean	cytosol	58.12	59.44
KRG94665	Soybean	cytosol	58.12	59.44
TraesCS1D01G099900.1	Wheat	cytosol	60.68	59.17
Solyc06g008780.1.1	Tomato	extracellular	49.91	58.87
KRH70053	Soybean	cytosol	56.92	58.12
Solyc05g009260.1.1	Tomato	extracellular	7.69	55.56
KRH08397	Soybean	cytosol	54.19	55.32
HORVU1Hr1G021550.4	Barley	cytosol	60.17	54.83
KRH49941	Soybean	cytosol	50.94	51.56
KRH41935	Soybean	cytosol	50.77	51.3
Solyc06g007840.2.1	Tomato	extracellular, plastid	7.18	51.22
KRH52925	Soybean	cytosol	49.91	49.74
KRH62206	Soybean	cytosol	49.4	49.57
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	9.57	49.12
KRH72427	Soybean	cytosol	49.57	46.03
KRH16819	Soybean	cytosol	49.4	45.16
Solyc06g084490.1.1	Tomato	plastid	14.02	39.05
KRH14993	Soybean	cytosol	30.77	31.69
KRH31107	Soybean	cytosol	31.79	31.53
KRG97777	Soybean	cytosol	31.79	31.53
KRH73146	Soybean	cytosol	31.45	31.51

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100779337	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02006091
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_10G021500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR032675	UniProt:K7LGY5	EnsemblPlants:KRH31921	ProteinID:KRH31921	ProteinID:KRH31921.1
ProteinID:KRH31922.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000233D510	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:1868221..1871561

Molecular Weight (calculated)

65635.4 Da

IEP (calculated)

6.580

GRAVY (calculated)

-0.058

Length

585 amino acids

Sequence
(BLAST)

001: MRPRVNYSFP EEVLEHVFSF IECDKDRGSI SLVCKSWYEI ERWCRRRVFV GNCYAVSPAT VVNRFPKVRS IAIKGKPHFA DFNLVPEGWG AYVGPWIKAM
101: AAAYPWLQEI RLKRMVISDE CLELIAKSFK NFQVLVLTSC EGFTTDGLAA IAANCRNLRE LELRESEVDD ICGHWLSHFP DSYTSLVSLN ISCLGNEVNL
201: SALERLVSRC PNLQTLRLNR AVPLDRLANL LRGAPQLVEL GTGTYTTEMR PEVFTNLAEA FSGCKQLKGL SGFWDVLPSY LPAVYPICSN LTSLNLSYAT
301: IQSPDLIKLV GQCESLQRLW VLDYIEDAGL EVIAASCKDL RELRVFPSDP FGLEPNVALT EQGLVSVSEG CTKLQSVLYF CRQMTNSALD TIARNRPNMT
401: RFRLCIIEPQ APDHLTHQPL DAGFGAIVEH CKDLQRLSLS GLLTDRVFEY IGTYGKKLEM LSVAFAGDSD LGLHHVLSGC DNLRKLEIRD CPFGDKALLA
501: NAAKLETMRS LWMSSCLVSY GACKLLGQKL PRLNVEVIDE RGPPDSRPES SPVEKLYMYR TVSGPRLDMP GYVWRMQDDS ALRIS

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.