Factsheet for PGSC0003DMT400053430

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400039878
PGSC0003DMT400042074
PGSC0003DMT400046818
PGSC0003DMT400071582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	PGSC0003DMT400015610	AT1G04250.1	11713520
AT3G62980.1	PGSC0003DMT400015610	AT3G23050.1	11713520
AT3G62980.1	PGSC0003DMT400015655	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400034978	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400042074	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400039878	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400071582	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400046818	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008470.1.1	Tomato	extracellular	17.1	80.7
PGSC0003DMT400093216	Potato	mitochondrion	44.98	79.08
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	37.55	72.14
PGSC0003DMT400008765	Potato	cytosol	28.25	71.03
Solyc06g008810.2.1	Tomato	cytosol	78.07	49.88
PGSC0003DMT400056570	Potato	cytosol	95.91	43.43
Solyc06g008780.1.1	Tomato	extracellular	73.23	39.72
GSMUA_Achr5P26930_001	Banana	cytosol	66.17	38.36
PGSC0003DMT400029517	Potato	cytosol	81.04	37.52
PGSC0003DMT400061752	Potato	plastid	76.21	35.34
KRH31921	Soybean	cytosol	74.72	34.36
KRH71533	Soybean	cytosol	74.72	34.36
AT3G62980.1	Thale cress	cytosol	75.46	34.18
CDY53998	Canola	cytosol	73.98	34.08
KRH68108	Soybean	cytosol	73.98	33.96
CDY11468	Canola	cytosol	75.09	33.95
Bra007720.1-P	Field mustard	cytosol	75.09	33.95
CDX76680	Canola	cytosol	74.35	33.61
KRG96377	Soybean	cytosol	72.86	33.39
Bra003518.1-P	Field mustard	cytosol	73.61	33.33
CDY68868	Canola	cytosol	62.83	31.3
CDX67912	Canola	endoplasmic reticulum, golgi	73.61	30.7
GSMUA_Achr3P23850_001	Banana	cytosol	63.57	29.38
Solyc06g008460.1.1	Tomato	extracellular	24.91	28.27
Zm00001d010863_P001	Maize	plastid	61.34	27.97
Os05t0150500-00	Rice	plastid	60.97	27.94
KXG21312	Sorghum	plastid	60.59	27.58
TraesCS1A01G091300.1	Wheat	cytosol	60.59	27.53
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	60.22	27.5
TraesCS1D01G099900.1	Wheat	cytosol	60.22	27.0
CDX89163	Canola	cytosol	61.71	26.52
Bra014378.1-P	Field mustard	cytosol	61.71	26.52
HORVU1Hr1G021550.4	Barley	cytosol	59.85	25.08
PGSC0003DMT400057711	Potato	cytosol	52.79	24.11
PGSC0003DMT400005419	Potato	cytosol	44.61	19.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400053430	EnsemblPlantsGene:PGSC0003DMG400020729	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	PGSC:PGSC0003DMG400020729	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI00029688B8
UniProt:M1BUZ5	MapMan:35.1	:	:	:	:

Description

TIR1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020729]

Coordinates

chr6:+:966451..967260

Molecular Weight (calculated)

29999.3 Da

IEP (calculated)

5.194

GRAVY (calculated)

-0.045

Length

269 amino acids

Sequence
(BLAST)

001: MNGLEEIANT CKELQELRVF PSDPFAPGPN VSLTEQGLVA VSMGCLKLQS VLYFCRQMTN DALVTIARNR PNMIRFRLCI IEPRTPDYLT LEPLDAGFGA
101: IVQHCKELRR LSLSGLLTDR VFEYIGVHVK KLEMISLAFA GDSDLGLHYI LSGCESLRKL EIRDCPFGDE ALLANAAKLE TMRSLWMSNC SVSFEACKLL
201: AQKLPGLNVE VIDERGHPDT RPESCPVEKL YIYRTVSGRR FDTPGFVWNI DEDAALTPYS NGNCSLVSS

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.