Factsheet for PGSC0003DMT400029517

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400039878
PGSC0003DMT400042074
PGSC0003DMT400046818
PGSC0003DMT400071582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	PGSC0003DMT400015610	AT1G04250.1	11713520
AT3G62980.1	PGSC0003DMT400015610	AT3G23050.1	11713520
AT3G62980.1	PGSC0003DMT400015655	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400034978	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400042074	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400039878	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400071582	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400046818	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074520.2.1	Tomato	cytosol	97.93	97.93
PGSC0003DMT400053430	Potato	cytosol	37.52	81.04
KRH68108	Soybean	cytosol	79.69	79.01
KRG96377	Soybean	cytosol	79.52	78.71
PGSC0003DMT400056570	Potato	cytosol	80.38	78.62
PGSC0003DMT400061752	Potato	plastid	77.97	78.1
KRH71533	Soybean	cytosol	77.62	77.09
CDY68868	Canola	cytosol	71.26	76.67
KRH31921	Soybean	cytosol	77.11	76.58
CDY11468	Canola	cytosol	77.8	75.97
CDY53998	Canola	cytosol	76.25	75.86
AT3G62980.1	Thale cress	cytosol	77.45	75.76
Bra007720.1-P	Field mustard	cytosol	77.45	75.63
CDX76680	Canola	cytosol	77.11	75.29
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	18.07	75.0
Bra003518.1-P	Field mustard	cytosol	76.42	74.75
PGSC0003DMT400093216	Potato	mitochondrion	19.62	74.51
CDX67912	Canola	endoplasmic reticulum, golgi	76.59	68.99
GSMUA_Achr5P26930_001	Banana	cytosol	54.56	68.32
GSMUA_Achr3P23850_001	Banana	cytosol	66.27	66.15
CDX89163	Canola	cytosol	70.57	65.5
Bra014378.1-P	Field mustard	cytosol	70.57	65.5
PGSC0003DMT400008765	Potato	cytosol	11.7	63.55
Os05t0150500-00	Rice	plastid	61.96	61.33
Zm00001d010863_P001	Maize	plastid	62.13	61.19
KXG21312	Sorghum	plastid	62.13	61.08
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	61.27	60.44
TraesCS1A01G091300.1	Wheat	cytosol	61.27	60.14
TraesCS1D01G099900.1	Wheat	cytosol	61.27	59.33
HORVU1Hr1G021550.4	Barley	cytosol	60.07	54.36
PGSC0003DMT400057711	Potato	cytosol	54.91	54.16
PGSC0003DMT400005419	Potato	cytosol	48.88	46.33

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102583018	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1ASY1	PFAM:PF12937	EnsemblPlantsGene:PGSC0003DMG400011353	PGSC:PGSC0003DMG400011353
EnsemblPlants:PGSC0003DMT400029517	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0002965E9A	RefSeq:XP_006359432.1	:	:	:

Description

TIR1 [Source:PGSC_GENE;Acc:PGSC0003DMG400011353]

Coordinates

chr9:+:51985972..51990021

Molecular Weight (calculated)

65614.3 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.041

Length

581 amino acids

Sequence
(BLAST)

001: MAYAFPEEVL EHVFSFLTTD KDRNAVSLVC KSWYEIERWC RKRIFVGNCY AVSPRIMIRR FPEVRSVELK GKPHFADFNL VPEGWGAYVY PWVLAMSRSY
101: PWLEEIKLKR MVITDESLEL ISKSFKNFKV LVLSSCDGFT TDGLAAIAAN CRNLRKLDLG ESEVEDLSGH WLSHFPDNCT SLVSLNIACL ASEVSLLALE
201: RLVTRSPNLR TLRINRAVPL ERLPNLLRRT SQLVEFGTGV FSADVRSDFF SNLTEAFSSC KQLKCLSGFW DVVPAYLPAL YPVCSRLTSL NLSYATCQNP
301: ELGKLISQCH NLQRLWVLDY IEDTGLEELA ANCKDLQELR VFPSDPFAAE PNTTLTEQGL VAVSDGCPKL QSVLYFCRQM TNAALVTIAR NRPNMIRFRL
401: CIIEPRTPDY LTLGSFDAGF GAIVENCKEL RRLSLAGLLT DRVFEYIGAH AKKLEMLSIA FAGDSDLGLH HVLSGCDNLR KLEIRDCPFG DKALLANAAK
501: LETMRSLWMS SCSVSFEACK MLAQKMPRLN VEVIDERGPP DTRPESCPVE KLYIYRTVAG RRFDTPGYVW TMDEDAAVRL T

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.