Factsheet for PGSC0003DMT400071582

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008765
PGSC0003DMT400013682
PGSC0003DMT400029517
PGSC0003DMT400053430
PGSC0003DMT400056570
PGSC0003DMT400061752
PGSC0003DMT400063662
PGSC0003DMT400093216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	PGSC0003DMT400008765	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400013682	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400029517	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400053430	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400056570	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400061752	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400093216	AT3G62980.1	12682009
AT4G36800.1	PGSC0003DMT400063662	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079970.2.1	Tomato	cytosol	69.37	84.15
PGSC0003DMT400039878	Potato	cytosol	63.96	77.6
VIT_04s0023g01280.t01	Wine grape	cytosol	61.26	74.32
KRH76867	Soybean	cytosol	61.26	74.32
KRH28611	Soybean	cytosol	61.26	74.32
AT4G36800.1	Thale cress	cytosol	59.01	71.2
Bra038542.1-P	Field mustard	cytosol	58.56	70.65
Bra010575.1-P	Field mustard	cytosol	58.11	69.73
Bra011708.1-P	Field mustard	cytosol	57.66	69.19
Bra014836.1-P	Field mustard	cytosol	57.66	68.45
Bra017784.1-P	Field mustard	cytosol	57.21	67.91
EER88903	Sorghum	cytosol	55.86	67.76
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	56.31	67.57
TraesCS5D01G187200.1	Wheat	cytosol	54.95	66.67
TraesCS5A01G182800.1	Wheat	cytosol	54.95	66.67
TraesCS5B01G180900.1	Wheat	cytosol	54.5	66.12
GSMUA_Achr6P08850_001	Banana	cytosol	54.5	66.12
HORVU5Hr1G055840.2	Barley	cytosol	54.5	66.12
Os10t0190000-02	Rice	cytosol, nucleus	54.5	65.76
VIT_03s0063g02110.t01	Wine grape	golgi	63.51	65.58
TraesCS6D01G019200.1	Wheat	cytosol	53.6	65.03
TraesCS6B01G023900.1	Wheat	cytosol	53.6	65.03
TraesCS6A01G016200.1	Wheat	cytosol	53.6	65.03
EES13692	Sorghum	cytosol	52.7	63.93
GSMUA_Achr3P13610_001	Banana	cytosol	52.7	63.93
Zm00001d036481_P001	Maize	cytosol	56.76	63.32
HORVU6Hr1G003170.2	Barley	mitochondrion	53.6	63.3
Bra036361.1-P	Field mustard	cytosol	55.41	62.12
Os09t0321900-01	Rice	plastid	48.2	58.47
CDY30311	Canola	mitochondrion	58.56	56.03
CDY51497	Canola	nucleus	58.11	50.0
Os08t0374100-01	Rice	cytosol, nucleus	52.25	50.0
GSMUA_Achr2P23180_001	Banana	cytosol	54.95	49.59
PGSC0003DMT400032948	Potato	cytosol	49.1	34.82
PGSC0003DMT400053003	Potato	cytosol	25.68	31.15
Zm00001d014671_P001	Maize	nucleus	57.21	26.91

Protein Annotations

EntrezGene:102589332	MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M1CNZ9
PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400027848	PGSC:PGSC0003DMG400027848	EnsemblPlants:PGSC0003DMT400071582	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002958460	:	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027848]

Coordinates

chr4:+:69355873..69358527

Molecular Weight (calculated)

25567.7 Da

IEP (calculated)

7.536

GRAVY (calculated)

-0.376

Length

222 amino acids

Sequence
(BLAST)

001: MKWVENHEDS RFKSRQRQNI GELFPSVLAL MDKVTFIPIA DGRFRTAVED LKRIRSVKPG SIADVLRCWN MDGYVNISEL NLPKTCSISF PNGKDDLMNF
101: EVTIRPDEGY YMGGTFTFSF SISPIYPHEA PKVKCKTKVY HPNIDLEGNV CLNILREDWK PVLNINTIIY GLYHLFTEPN HEDPLNHDAA AVLRDNPKMF
201: ESNVRRAMHG GYVGQTFFTR CM

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.