Factsheet for PGSC0003DMT400053003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007500.1.1	Tomato	cytosol	86.89	60.69
PGSC0003DMT400039878	Potato	cytosol	39.34	39.34
EER88903	Sorghum	cytosol	35.52	35.52
Os10t0190000-02	Rice	cytosol, nucleus	34.97	34.78
EES13692	Sorghum	cytosol	34.43	34.43
TraesCS6D01G019200.1	Wheat	cytosol	33.88	33.88
TraesCS6B01G023900.1	Wheat	cytosol	33.88	33.88
TraesCS6A01G016200.1	Wheat	cytosol	33.88	33.88
HORVU5Hr1G055840.2	Barley	cytosol	33.33	33.33
TraesCS5D01G187200.1	Wheat	cytosol	33.33	33.33
TraesCS5B01G180900.1	Wheat	cytosol	33.33	33.33
TraesCS5A01G182800.1	Wheat	cytosol	33.33	33.33
HORVU6Hr1G003170.2	Barley	mitochondrion	33.88	32.98
GSMUA_Achr6P08850_001	Banana	cytosol	32.79	32.79
Zm00001d036481_P001	Maize	cytosol	35.52	32.66
VIT_18s0001g12010.t01	Wine grape	cytosol	34.97	32.49
GSMUA_Achr3P13610_001	Banana	cytosol	32.24	32.24
Os09t0321900-01	Rice	plastid	31.15	31.15
Os08t0374100-01	Rice	cytosol, nucleus	35.52	28.02
PGSC0003DMT400071582	Potato	cytosol	31.15	25.68
GSMUA_Achr2P23180_001	Banana	cytosol	33.33	24.8
PGSC0003DMT400032948	Potato	cytosol	34.97	20.45
Zm00001d014671_P001	Maize	nucleus	31.15	12.08

Protein Annotations

EntrezGene:102599344	MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M1BU97
PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400020568	PGSC:PGSC0003DMG400020568	EnsemblPlants:PGSC0003DMT400053003	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000296BDD8	RefSeq:XP_006344122.1	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020568]

Coordinates

chr6:+:2798578..2799129

Molecular Weight (calculated)

20972.0 Da

IEP (calculated)

5.114

GRAVY (calculated)

-0.461

Length

183 amino acids

Sequence
(BLAST)

001: MINLIKVREK QKEAAENAGS KTAIKEQTAS KLRVHRDISE LTLPPICKIE FPNGKDDLMN FEVAIKPDEG YYHDGEFPFT FEIPILYPHD APKVKCKIKV
101: YHPNIDYDGN VCLNILREDW KPVLNINAVI YGLVHLFTEP NHEDPLNPEA ADELRDNPIS FESNVRSAMW GETVHGLTYD RIL

Best Arabidopsis Sequence Match ( AT2G18600.1 )
(BLAST)

001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM

Arabidopsis Description

RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.