Factsheet for VIT_18s0001g12010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01280.t01	Wine grape	cytosol	67.51	72.68
GSMUA_Achr6P08850_001	Banana	cytosol	64.47	69.4
GSMUA_Achr3P13610_001	Banana	cytosol	63.45	68.31
Os10t0190000-02	Rice	cytosol, nucleus	63.45	67.93
EER88903	Sorghum	cytosol	62.44	67.21
TraesCS5D01G187200.1	Wheat	cytosol	61.93	66.67
HORVU5Hr1G055840.2	Barley	cytosol	61.93	66.67
TraesCS5B01G180900.1	Wheat	cytosol	61.93	66.67
TraesCS5A01G182800.1	Wheat	cytosol	61.93	66.67
TraesCS6D01G019200.1	Wheat	cytosol	61.93	66.67
TraesCS6B01G023900.1	Wheat	cytosol	61.93	66.67
TraesCS6A01G016200.1	Wheat	cytosol	61.93	66.67
HORVU6Hr1G003170.2	Barley	mitochondrion	61.93	64.89
EES13692	Sorghum	cytosol	59.39	63.93
Os09t0321900-01	Rice	plastid	58.88	63.39
VIT_03s0063g02110.t01	Wine grape	golgi	68.02	62.33
Zm00001d036481_P001	Maize	cytosol	62.94	62.31
GSMUA_Achr2P23180_001	Banana	cytosol	65.48	52.44
Solyc02g085690.2.1	Tomato	extracellular, vacuole	58.38	50.88
Os08t0374100-01	Rice	cytosol, nucleus	59.9	50.86
Solyc06g007500.1.1	Tomato	cytosol	54.31	40.84
PGSC0003DMT400032948	Potato	cytosol	60.91	38.34
PGSC0003DMT400053003	Potato	cytosol	32.49	34.97
Zm00001d014671_P001	Maize	nucleus	54.31	22.67

Protein Annotations

EntrezGene:100245559	wikigene:100245559	MapMan:19.2.2.3.4	Gene3D:3.10.110.10	ProteinID:CBI19650	ProteinID:CBI19650.3
UniProt:E0CQ04	EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0019788
GO:GO:0045116	InterPro:IPR000608	InterPro:IPR016135	EntrezGene:LOC100245559	wikigene:LOC100245559	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00015C8061	ArrayExpress:VIT_18s0001g12010	EnsemblPlantsGene:VIT_18s0001g12010
EnsemblPlants:VIT_18s0001g12010.t01	RefSeq:XP_002281780	RefSeq:XP_002281780.1	:	:	:

Description

No Description!

Coordinates

chr18:+:10234033..10235820

Molecular Weight (calculated)

22385.9 Da

IEP (calculated)

7.301

GRAVY (calculated)

-0.394

Length

197 amino acids

Sequence
(BLAST)

001: MIRLFKEKEK LREIAESSDG RAPVKKLSAG ELRLHKDISE LNLPESCGIS FPNGKDDLLN FEITIRPDEG FYGGGDFVFS FEVPLMYPHE APKVKCKTKV
101: YHPNIDLAGN VCLNILREDW NPVLNINTII YGLYHLFTQP SHEDPLNPDA AALLRASSQG FQAVVRHVMT NGYRGETYHP LFMQHMKAAS YHQSRLK

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.