Factsheet for Solyc06g007500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053003	Potato	cytosol	60.69	86.89
Solyc12g089030.1.1	Tomato	cytosol	48.47	69.4
Solyc04g079970.2.1	Tomato	cytosol	47.33	67.76
EER88903	Sorghum	cytosol	43.13	61.75
Os10t0190000-02	Rice	cytosol, nucleus	42.75	60.87
GSMUA_Achr3P13610_001	Banana	cytosol	41.6	59.56
GSMUA_Achr6P08850_001	Banana	cytosol	41.22	59.02
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	17.94	58.75
TraesCS6D01G019200.1	Wheat	cytosol	40.46	57.92
TraesCS6B01G023900.1	Wheat	cytosol	40.46	57.92
TraesCS6A01G016200.1	Wheat	cytosol	40.46	57.92
HORVU5Hr1G055840.2	Barley	cytosol	40.08	57.38
TraesCS5D01G187200.1	Wheat	cytosol	40.08	57.38
TraesCS5B01G180900.1	Wheat	cytosol	40.08	57.38
TraesCS5A01G182800.1	Wheat	cytosol	40.08	57.38
Zm00001d036481_P001	Maize	cytosol	43.51	57.29
EES13692	Sorghum	cytosol	39.69	56.83
HORVU6Hr1G003170.2	Barley	mitochondrion	40.46	56.38
Os09t0321900-01	Rice	plastid	38.17	54.64
VIT_18s0001g12010.t01	Wine grape	cytosol	40.84	54.31
Solyc02g085690.2.1	Tomato	extracellular, vacuole	41.98	48.67
Os08t0374100-01	Rice	cytosol, nucleus	41.6	46.98
GSMUA_Achr2P23180_001	Banana	cytosol	42.37	45.12
Zm00001d014671_P001	Maize	nucleus	39.31	21.82

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0019788
GO:GO:0045116	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4C3D2	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc06g007500.1
EnsemblPlants:Solyc06g007500.1.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000276611D	:

Description

No Description!

Coordinates

chr6:-:1495779..1498739

Molecular Weight (calculated)

30365.0 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.550

Length

262 amino acids

Sequence
(BLAST)

001: MINLIKVREK QKEAAENAGS KTPIKEQTAS KLRVHRDISE LTLPSICTIE FPNGKDDLMN FEVSIKPDEG YYHDGEFPFK FEIPILYPHD APKVKCKIKV
101: YHPNIDYDGN VCLNILREDW KPVLNINAVI YGLIHLFTEP NHEDPLNPEA ADELRDNPRS FESHVRSAMW GESVHGLTYD QQNIDLEGNV CLNILREDWK
201: PILNINAVIY GLIHLFTEPN YEDPLNHEAA DELRDNPKMF DSNVRRTMWG GHMHDVYFDR VL

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.