Factsheet for Os09t0321900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os03t0820100-01
Os05t0150500-00
Os05t0193900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	Os03t0820100-01	AT1G05180.1	12682009
AT4G36800.1	Os05t0150500-00	AT3G62980.1	12682009
AT4G36800.1	Os01t0935300-02	AT4G02570.1	12682009
AT4G36800.1	Os05t0193900-00	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G019200.1	Wheat	cytosol	85.79	85.79
TraesCS6B01G023900.1	Wheat	cytosol	85.79	85.79
TraesCS6A01G016200.1	Wheat	cytosol	85.79	85.79
TraesCS5D01G187200.1	Wheat	cytosol	85.79	85.79
TraesCS5B01G180900.1	Wheat	cytosol	85.79	85.79
TraesCS5A01G182800.1	Wheat	cytosol	85.79	85.79
HORVU5Hr1G055840.2	Barley	cytosol	85.79	85.79
HORVU6Hr1G003170.2	Barley	mitochondrion	85.79	83.51
EES13692	Sorghum	cytosol	82.51	82.51
Os10t0190000-02	Rice	cytosol, nucleus	77.05	76.63
GSMUA_Achr3P13610_001	Banana	cytosol	76.5	76.5
GSMUA_Achr6P08850_001	Banana	cytosol	74.86	74.86
Bra038542.1-P	Field mustard	cytosol	69.95	69.57
Solyc04g079970.2.1	Tomato	cytosol	69.4	69.4
VIT_04s0023g01280.t01	Wine grape	cytosol	68.31	68.31
Solyc12g089030.1.1	Tomato	cytosol	68.31	68.31
KRH28611	Soybean	cytosol	67.21	67.21
KRH76867	Soybean	cytosol	67.21	67.21
PGSC0003DMT400039878	Potato	cytosol	67.21	67.21
Os08t0374100-01	Rice	cytosol, nucleus	84.7	66.81
AT4G36800.1	Thale cress	cytosol	66.12	65.76
Bra010575.1-P	Field mustard	cytosol	65.57	64.86
Bra011708.1-P	Field mustard	cytosol	64.48	63.78
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	63.93	63.24
Bra014836.1-P	Field mustard	cytosol	64.48	63.1
Bra017784.1-P	Field mustard	cytosol	64.48	63.1
VIT_03s0063g02110.t01	Wine grape	golgi	70.49	60.0
VIT_18s0001g12010.t01	Wine grape	cytosol	63.39	58.88
Solyc10g039370.1.1	Tomato	nucleus, peroxisome, plastid	25.68	58.75
Bra036361.1-P	Field mustard	cytosol	62.84	58.08
GSMUA_Achr2P23180_001	Banana	cytosol	77.6	57.72
CDY30311	Canola	mitochondrion	69.95	55.17
Solyc02g085690.2.1	Tomato	extracellular, vacuole	63.93	51.77
CDY51497	Canola	nucleus	69.4	49.22
PGSC0003DMT400071582	Potato	cytosol	58.47	48.2
Solyc06g007500.1.1	Tomato	cytosol	54.64	38.17
PGSC0003DMT400032948	Potato	cytosol	64.48	37.7
PGSC0003DMT400053003	Potato	cytosol	31.15	31.15

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	EntrezGene:4346713	EMBL:AK073821	ProteinID:BAD36217.1	ProteinID:BAF24773.1
ProteinID:BAT07440.1	ProteinID:EEE69451.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0019788
GO:GO:0045116	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlantsGene:Os09g0321900	EnsemblPlants:Os09t0321900-01	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF3	UniProt:Q69NC4	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00004039FB	RefSeq:XP_015610865.1
RefSeq:XP_015610866.1	:	:	:	:	:

Description

UBIQUITIN-CONJUGATING ENZYME 6Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12). (Os09t0321900-01)

Coordinates

chr9:+:9357985..9362379

Molecular Weight (calculated)

20774.0 Da

IEP (calculated)

8.790

GRAVY (calculated)

-0.596

Length

183 amino acids

Sequence
(BLAST)

001: MLNLFKIKGQ KKEEAANTNG RPPAKKQSPG ELRLHKDIAE LNLPKKTNIT FPNGKDDLMN IEITLRPDEG YYVGGAFVFT LQVPPTYPHE PPKVKCTTKV
101: YHPNIDLDGN VCLNILREDW KPVLNINTIV YGLNLLFIQP NDEDPLNHDA AAVLRDDPQK FRRNVQTAMS GGYVDRVHFP RCK

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.