CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038542.1-P	Field mustard	cytosol	70.93	99.46
CDY30311	Canola	mitochondrion	77.91	86.64
KRH76867	Soybean	cytosol	58.14	81.97
KRH28611	Soybean	cytosol	58.14	81.97
Solyc04g079970.2.1	Tomato	cytosol	57.36	80.87
PGSC0003DMT400039878	Potato	cytosol	57.36	80.87
VIT_04s0023g01280.t01	Wine grape	cytosol	56.59	79.78
Solyc12g089030.1.1	Tomato	cytosol	55.81	78.69
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	56.2	78.38
Os10t0190000-02	Rice	cytosol, nucleus	55.43	77.72
EER88903	Sorghum	cytosol	54.65	77.05
GSMUA_Achr6P08850_001	Banana	cytosol	53.49	75.41
TraesCS6D01G019200.1	Wheat	cytosol	53.1	74.86
GSMUA_Achr3P13610_001	Banana	cytosol	53.1	74.86
TraesCS6B01G023900.1	Wheat	cytosol	53.1	74.86
TraesCS6A01G016200.1	Wheat	cytosol	53.1	74.86
HORVU5Hr1G055840.2	Barley	cytosol	52.33	73.77
TraesCS5A01G182800.1	Wheat	cytosol	51.94	73.22
TraesCS5D01G187200.1	Wheat	cytosol	51.94	73.22
TraesCS5B01G180900.1	Wheat	cytosol	51.94	73.22
HORVU6Hr1G003170.2	Barley	mitochondrion	53.1	72.87
EES13692	Sorghum	cytosol	51.55	72.68
Zm00001d036481_P001	Maize	cytosol	55.04	71.36
VIT_03s0063g02110.t01	Wine grape	golgi	59.3	71.16
Os09t0321900-01	Rice	plastid	49.22	69.4
Os08t0374100-01	Rice	cytosol, nucleus	53.88	59.91
PGSC0003DMT400071582	Potato	cytosol	50.0	58.11
GSMUA_Achr2P23180_001	Banana	cytosol	55.04	57.72
Zm00001d014671_P001	Maize	nucleus	49.22	26.91

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	GO:A0A078INJ3	UniProt:A0A078INJ3	EnsemblPlants:CDY51497	ProteinID:CDY51497
ProteinID:CDY51497.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00003579001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EE602E	SEG:seg

Description

BnaC09g51120DBnaC09g51120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INJ3]

Coordinates

chrLK033001:+:72393..73880

Molecular Weight (calculated)

29776.6 Da

IEP (calculated)

9.826

GRAVY (calculated)

-0.710

Length

258 amino acids

Sequence
(BLAST)

001: MQSYCFYFIQ VKSSTCINSE TQKVGSETKG RFQNYTERVL LNQQPRERKL RSRERQRFDP NCFDPNSRRR RGVIMIGLFK VKEKQKEEAK NNNARGASAK
101: KQSAGELRLH KDITELNMPK SCSISFPNGK NDLMNFEVTI KPDDGYYLGG KFVFTFQVSP VYPHEAPKVK CKTKVYHPNI DLEGNVCLNI LREDWKPVLN
201: INTVIYGLFH LFTEPNHEDP LNHDAAAVLR DNPKQFEANV KRAMYGGFVG QTSFPRCI

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.